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S. scrofa Gene: - ENSSSCG00000006842 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006842
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)11 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.81e3
  • 1.81e3
  • 3.71e3
92.32
  • 92.32
  • 84.28
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.48e4
47.51
  • 47.51
  • 37.25
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
35.41
  • 35.41
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.53e4
  • 1.53e4
  • 1.68e4
35.19
  • 35.19
  • 28.85
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.58e4
  • 1.58e4
33.12
  • 33.12
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
  • 1.63e4
  • 1.66e4
  • 1.71e4
31.93
  • 31.93
  • 30.82
  • 29.55
  • 27.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.62e4
  • 1.62e4
31.49
  • 31.49
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
29.93
  • 29.93
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.67e4
  • 1.67e4
29.18
  • 29.18
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.67e4
  • 1.67e4
29.05
  • 29.05
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.72e4
  • 1.72e4
  • 1.76e4
27.06
  • 27.06
  • 25.31
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.75e4
  • 1.75e4
  • 1.77e4
25.93
  • 25.93
  • 24.93
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.75e4
  • 1.75e4
  • 2.06e4
25.93
  • 25.93
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.76e4
  • 1.76e4
  • 1.80e4
  • 1.82e4
  • 1.97e4
25.34
  • 25.34
  • 23.86
  • 22.72
  • 16.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.77e4
  • 1.77e4
25.12
  • 25.12
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.81e4
  • 1.81e4
23.15
  • 23.15
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.84e4
  • 1.84e4
22.04
  • 22.04
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.88e4
  • 1.88e4
20.18
  • 20.18
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.90e4
  • 1.90e4
19.40
  • 19.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006842.

Cross-references

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