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S. scrofa Gene: PRPF38B - ENSSSCG00000006845 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006845
NamePRPF38B
Descriptionpre-mRNA processing factor 38B [Source:HGNC Symbol;Acc:HGNC:25512]
OrganismSus scrofa (pig)
Synonym(s)flj10330, net1
Orthologs(s)17 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.11e3
  • 2.11e3
91.05
  • 91.05
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.21e3
  • 2.21e3
90.65
  • 90.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.28e3
  • 2.28e3
  • 2.53e3
  • 4.75e3
90.32
  • 90.32
  • 89.26
  • 79.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.31e3
  • 2.31e3
  • 4.88e3
  • 5.68e3
90.23
  • 90.23
  • 79.30
  • 75.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
2.54e3
  • 2.54e3
89.24
  • 89.24
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
2.70e3
  • 2.70e3
88.58
  • 88.58
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
2.74e3
  • 2.74e3
  • 2.86e3
  • 3.43e3
88.39
  • 88.39
  • 87.86
  • 85.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.95e3
  • 2.95e3
87.49
  • 87.49
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.03e3
  • 3.03e3
  • 4.06e3
87.16
  • 87.16
  • 82.78
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.25e3
  • 3.25e3
  • 5.03e3
86.23
  • 86.23
  • 78.68
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
3.33e3
  • 3.33e3
85.90
  • 85.90
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
3.42e3
  • 3.42e3
85.52
  • 85.52
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.52e3
  • 3.52e3
  • 4.20e3
  • 6.08e3
85.09
  • 85.09
  • 82.21
  • 74.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.57e3
  • 3.57e3
  • 4.65e3
84.86
  • 84.86
  • 80.31
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
3.58e3
  • 3.58e3
  • 3.82e3
  • 1.24e4
84.81
  • 84.81
  • 83.83
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
3.59e3
  • 3.59e3
  • 3.81e3
  • 4.59e3
  • 4.66e3
  • 7.09e3
84.80
  • 84.80
  • 83.84
  • 80.56
  • 80.27
  • 69.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
3.64e3
  • 3.64e3
  • 3.94e3
  • 4.17e3
84.57
  • 84.57
  • 83.29
  • 82.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
3.67e3
  • 3.67e3
84.45
  • 84.45
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
3.69e3
  • 3.69e3
84.35
  • 84.35
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
3.71e3
  • 3.71e3
84.29
  • 84.29
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
3.94e3
  • 3.94e3
83.31
  • 83.31
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
4.09e3
  • 4.09e3
82.67
  • 82.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
4.11e3
  • 4.11e3
  • 7.32e3
82.59
  • 82.59
  • 68.99
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
4.35e3
  • 4.35e3
  • 4.60e3
81.58
  • 81.58
  • 80.51
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
4.48e3
  • 4.48e3
81.00
  • 81.00
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
4.59e3
  • 4.59e3
80.55
  • 80.55
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
4.67e3
  • 4.67e3
80.21
  • 80.21
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
4.96e3
  • 4.96e3
78.99
  • 78.99
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
5.02e3
  • 5.02e3
78.74
  • 78.74
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
5.18e3
  • 5.18e3
78.04
  • 78.04
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
5.20e3
  • 5.20e3
77.95
  • 77.95
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
5.21e3
  • 5.21e3
  • 5.79e3
  • 6.77e3
  • 7.03e3
77.93
  • 77.93
  • 75.47
  • 71.31
  • 70.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.35e3
  • 5.35e3
77.34
  • 77.34
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
5.37e3
  • 5.37e3
77.23
  • 77.23
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
5.91e3
  • 5.91e3
74.96
  • 74.96
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.98e3
  • 5.98e3
  • 6.87e3
74.64
  • 74.64
  • 70.88
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
6.09e3
  • 6.09e3
74.19
  • 74.19
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
6.15e3
  • 6.15e3
73.95
  • 73.95
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
6.15e3
  • 6.15e3
73.93
  • 73.93
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
6.35e3
  • 6.35e3
73.10
  • 73.10
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
6.52e3
  • 6.52e3
72.38
  • 72.38
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
6.56e3
  • 6.56e3
72.19
  • 72.19
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
6.57e3
  • 6.57e3
72.16
  • 72.16
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
6.94e3
  • 6.94e3
70.61
  • 70.61
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
7.18e3
  • 7.18e3
69.55
  • 69.55
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
7.50e3
  • 7.50e3
68.23
  • 68.23
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
7.95e3
  • 7.95e3
66.28
  • 66.28
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
8.19e3
  • 8.19e3
65.31
  • 65.31
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006845.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa2 genesCompare expression
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000006845.

Cross-references

EnsemblENSSSCG00000006845 (PRPF38B)
HGNCHGNC:25512 (PRPF38B)
EMBLCU326386
Uniprot/SPTREMBLF1S580, F1S580_PIG

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