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S. scrofa Gene: FERMT1 - ENSSSCG00000007052 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000007052
NameFERMT1
Descriptionfermitin family member 1 [Source:HGNC Symbol;Acc:HGNC:15889]
OrganismSus scrofa (pig)
Synonym(s)c20orf42, flj20116, kind1, unc112a, urp1
Orthologs(s)30 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
4.25e3
  • 4.25e3
81.97
  • 81.97
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
6.33e3
  • 6.33e3
73.15
  • 73.15
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
7.45e3
  • 7.45e3
68.43
  • 68.43
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
7.67e3
  • 7.67e3
  • 8.07e3
  • 1.12e4
67.49
  • 67.49
  • 65.81
  • 52.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
7.74e3
  • 7.74e3
67.18
  • 67.18
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
8.47e3
  • 8.47e3
64.08
  • 64.08
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
9.22e3
  • 9.22e3
60.90
  • 60.90
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
9.28e3
  • 9.28e3
60.66
  • 60.66
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
57.52
  • 57.52
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.04e4
  • 1.04e4
  • 1.07e4
  • 1.21e4
55.93
  • 55.93
  • 54.66
  • 48.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
54.79
  • 54.79
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
  • 1.24e4
  • 1.24e4
53.41
  • 53.41
  • 47.43
  • 47.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.13e4
  • 1.13e4
51.91
  • 51.91
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.65
  • 50.65
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.53
  • 49.53
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.59e4
47.51
  • 47.51
  • 32.62
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.26e4
  • 1.26e4
  • 1.38e4
46.38
  • 46.38
  • 41.52
AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.02
  • 43.02
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
42.41
  • 42.41
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.37e4
  • 1.37e4
41.83
  • 41.83
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.37e4
  • 1.37e4
  • 1.60e4
41.76
  • 41.76
  • 32.02
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
  • 1.49e4
  • 1.60e4
  • 1.66e4
  • 1.74e4
39.84
  • 39.84
  • 36.82
  • 32.09
  • 29.75
  • 26.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
  • 1.54e4
36.30
  • 36.30
  • 34.82
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.56e4
  • 1.56e4
34.04
  • 34.04
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.62e4
  • 1.62e4
  • 1.68e4
  • 1.73e4
  • 1.77e4
31.31
  • 31.31
  • 28.81
  • 26.79
  • 24.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
31.03
  • 31.03
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.70e4
  • 1.70e4
27.77
  • 27.77
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.71e4
  • 1.71e4
27.33
  • 27.33
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.73e4
  • 1.73e4
26.73
  • 26.73
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.74e4
  • 1.74e4
26.36
  • 26.36
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.75e4
  • 1.75e4
25.99
  • 25.99
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.82e4
  • 1.82e4
22.81
  • 22.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species30 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000007052.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression
Bilateria2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000007052.

Cross-references

EnsemblENSSSCG00000007052 (FERMT1)
HGNCHGNC:15889 (FERMT1)
EMBLCU407154
Uniprot/SPTREMBLF1SBL4, F1SBL4_PIG

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