S. scrofa Gene: - ENSSSCG00000007206 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000007206
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0018685nursing stage
912
  • 912
96.14
  • 96.14
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
2.23e3
  • 2.23e3
90.54
  • 90.54
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
2.38e3
  • 2.38e3
  • 3.34e3
89.93
  • 89.93
  • 85.83
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
2.78e3
  • 2.78e3
88.22
  • 88.22
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
3.20e3
  • 3.20e3
  • 7.83e3
  • 1.24e4
86.42
  • 86.42
  • 66.83
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.45e3
  • 3.45e3
85.38
  • 85.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.74e3
  • 3.74e3
  • 4.37e3
  • 9.71e3
84.16
  • 84.16
  • 81.50
  • 58.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
3.97e3
  • 3.97e3
  • 5.48e3
  • 1.04e4
83.17
  • 83.17
  • 76.79
  • 55.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
4.10e3
  • 4.10e3
  • 4.98e3
  • 5.79e3
  • 6.29e3
  • 1.02e4
82.62
  • 82.62
  • 78.91
  • 75.45
  • 73.34
  • 56.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
4.33e3
  • 4.33e3
81.64
  • 81.64
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.40e3
  • 4.40e3
  • 1.18e4
81.37
  • 81.37
  • 49.95
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
4.67e3
  • 4.67e3
80.19
  • 80.19
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.81e3
  • 4.81e3
  • 5.48e3
  • 6.80e3
79.61
  • 79.61
  • 76.78
  • 71.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
5.10e3
  • 5.10e3
  • 6.60e3
  • 1.10e4
78.36
  • 78.36
  • 72.03
  • 53.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.27e3
  • 5.27e3
  • 1.33e4
77.66
  • 77.66
  • 43.71
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
5.68e3
  • 5.68e3
75.93
  • 75.93
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
5.85e3
  • 5.85e3
75.21
  • 75.21
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.88e3
  • 5.88e3
  • 6.21e3
  • 1.21e4
75.07
  • 75.07
  • 73.66
  • 48.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
6.24e3
  • 6.24e3
  • 7.03e3
  • 7.04e3
  • 9.01e3
73.55
  • 73.55
  • 70.21
  • 70.14
  • 61.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
6.25e3
  • 6.25e3
73.50
  • 73.50
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
6.38e3
  • 6.38e3
72.97
  • 72.97
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
6.59e3
  • 6.59e3
72.05
  • 72.05
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.86e3
  • 6.86e3
  • 1.26e4
70.92
  • 70.92
  • 46.77
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
6.87e3
  • 6.87e3
  • 1.03e4
70.90
  • 70.90
  • 56.35
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.18e3
  • 7.18e3
69.56
  • 69.56
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
8.05e3
  • 8.05e3
65.86
  • 65.86
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
8.57e3
  • 8.57e3
63.68
  • 63.68
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
9.01e3
  • 9.01e3
61.80
  • 61.80
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
9.22e3
  • 9.22e3
60.92
  • 60.92
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
9.40e3
  • 9.40e3
60.17
  • 60.17
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
9.78e3
  • 9.78e3
58.54
  • 58.54
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
9.86e3
  • 9.86e3
58.20
  • 58.20
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
9.94e3
  • 9.94e3
57.86
  • 57.86
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.73
  • 56.73
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.04e4
  • 1.04e4
55.73
  • 55.73
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.29
  • 55.29
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.06e4
  • 1.06e4
55.06
  • 55.06
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.13
  • 54.13
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.08e4
  • 1.08e4
54.13
  • 54.13
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.26
  • 53.26
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.48
  • 52.48
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.56
  • 51.56
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.87
  • 50.87
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.64
  • 50.64
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
49.92
  • 49.92
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.76
  • 47.76
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.55
  • 47.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000007206.

Cross-references

EnsemblENSSSCG00000007206
EMBLCU856069
Uniprot/SPTREMBLF1S7J3, F1S7J3_PIG

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