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S. scrofa Gene: ATP6V1B1 - ENSSSCG00000008314 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000008314
NameATP6V1B1
DescriptionATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1 [Source:HGNC Symbol;Acc:HGNC:853]
OrganismSus scrofa (pig)
Synonym(s)atp6b1, rta1b, vatb, vma2, vpp3
Orthologs(s)14 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000104life cycle
412
  • 412
98.26
  • 98.26
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
451
  • 451
98.09
  • 98.09
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
557
  • 557
  • 589
97.64
  • 97.64
  • 97.51
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
716
  • 716
96.97
  • 96.97
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
3.15e3
  • 3.15e3
  • 4.10e3
  • 7.18e3
86.63
  • 86.63
  • 82.63
  • 69.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
  • 1.34e4
53.80
  • 53.80
  • 43.22
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
  • 1.48e4
  • 1.54e4
49.83
  • 49.83
  • 37.40
  • 34.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.52e4
47.51
  • 47.51
  • 35.65
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
  • 1.52e4
  • 1.54e4
37.88
  • 37.88
  • 35.72
  • 34.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
  • 1.60e4
  • 1.60e4
35.52
  • 35.52
  • 32.38
  • 32.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.61e4
  • 1.61e4
31.59
  • 31.59
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.62e4
  • 1.62e4
31.23
  • 31.23
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.68e4
  • 1.68e4
  • 1.81e4
28.78
  • 28.78
  • 23.42
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.72e4
  • 1.72e4
  • 1.81e4
27.24
  • 27.24
  • 23.17
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.75e4
  • 1.75e4
25.71
  • 25.71
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.79e4
  • 1.79e4
  • 1.86e4
  • 1.93e4
  • 1.97e4
23.99
  • 23.99
  • 21.17
  • 18.09
  • 16.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.81e4
  • 1.81e4
23.49
  • 23.49
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.89e4
  • 1.89e4
19.75
  • 19.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000008314.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000008314.

Cross-references

EnsemblENSSSCG00000008314 (ATP6V1B1)
HGNCHGNC:853 (ATP6V1B1)
EMBLCU929952
Uniprot/SPTREMBLF1SLE5, F1SLE5_PIG

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