S. scrofa Gene: VAX2 - ENSSSCG00000008318 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000008318
NameVAX2
Descriptionventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]
OrganismSus scrofa (pig)
Synonym(s)dres93
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.55e3
  • 8.55e3
  • 1.39e4
63.78
  • 63.78
  • 40.99
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.15e4
  • 1.15e4
  • 1.24e4
51.11
  • 51.11
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.18e4
  • 1.18e4
  • 1.25e4
49.93
  • 49.93
  • 46.82
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
  • 1.82e4
48.49
  • 48.49
  • 22.83
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
44.06
  • 44.06
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.74e4
43.44
  • 43.44
  • 26.37
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
41.95
  • 41.95
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
  • 1.51e4
  • 1.76e4
39.32
  • 39.32
  • 35.88
  • 25.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.45e4
  • 1.45e4
38.73
  • 38.73
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
36.20
  • 36.20
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.53e4
  • 1.53e4
35.22
  • 35.22
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.57e4
  • 1.57e4
33.62
  • 33.62
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.58e4
  • 1.58e4
  • 1.61e4
33.19
  • 33.19
  • 31.61
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.63e4
  • 1.63e4
30.79
  • 30.79
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
  • 1.92e4
29.05
  • 29.05
  • 18.72
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.79e4
  • 1.79e4
23.94
  • 23.94
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.82e4
  • 1.82e4
22.73
  • 22.73
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.85e4
  • 1.85e4
  • 2.06e4
21.38
  • 21.38
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.87e4
  • 1.87e4
  • 2.17e4
  • 2.19e4
20.75
  • 20.75
  • 8.06
  • 7.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.95e4
  • 1.95e4
17.50
  • 17.50
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000008318.

Cross-references

EnsemblENSSSCG00000008318 (VAX2)
HGNCHGNC:12661 (VAX2)
EMBLCU929952
Uniprot/SPTREMBLF1SLE1, F1SLE1_PIG

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