S. scrofa Gene: BCL11A - ENSSSCG00000008392 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000008392
NameBCL11A
DescriptionB-cell CLL/lymphoma 11A (zinc finger protein) [Source:HGNC Symbol;Acc:HGNC:13221]
OrganismSus scrofa (pig)
Synonym(s)bcl11a-l, bcl11a-s, bcl11a-xl, ctip1, evi9, hbfqtl5, znf856
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.66e3
  • 3.66e3
  • 7.11e3
84.49
  • 84.49
  • 69.84
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.75e3
  • 3.75e3
  • 3.88e3
  • 4.66e3
  • 5.75e3
84.11
  • 84.11
  • 83.57
  • 80.25
  • 75.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
5.15e3
  • 5.15e3
78.16
  • 78.16
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.27e3
  • 5.27e3
77.68
  • 77.68
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.51e3
  • 5.51e3
76.64
  • 76.64
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.71e3
  • 6.71e3
71.56
  • 71.56
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.89e3
  • 6.89e3
  • 1.52e4
  • 1.62e4
70.79
  • 70.79
  • 35.65
  • 31.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
7.64e3
  • 7.64e3
67.62
  • 67.62
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
9.16e3
  • 9.16e3
  • 9.29e3
  • 9.68e3
61.19
  • 61.19
  • 60.62
  • 58.97
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
9.54e3
  • 9.54e3
59.55
  • 59.55
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
9.75e3
  • 9.75e3
58.67
  • 58.67
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
9.79e3
  • 9.79e3
58.49
  • 58.49
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
9.87e3
  • 9.87e3
58.17
  • 58.17
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.94
  • 56.94
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
56.16
  • 56.16
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.40
  • 54.40
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
  • 1.24e4
  • 1.32e4
54.24
  • 54.24
  • 47.63
  • 44.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.94
  • 53.94
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
51.42
  • 51.42
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.06
  • 51.06
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.58
  • 48.58
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
1.24e4
  • 1.24e4
47.51
  • 47.51
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.17
  • 45.17
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.36e4
  • 1.36e4
42.49
  • 42.49
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
  • 1.44e4
  • 1.51e4
42.44
  • 42.44
  • 39.00
  • 36.04
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.67
  • 41.67
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
40.78
  • 40.78
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.40e4
  • 1.40e4
  • 1.57e4
40.45
  • 40.45
  • 33.37
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.43e4
  • 1.43e4
39.37
  • 39.37
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
  • 1.60e4
38.58
  • 38.58
  • 32.01
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.49e4
  • 1.49e4
37.04
  • 37.04
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
  • 1.66e4
  • 1.79e4
34.24
  • 34.24
  • 29.70
  • 24.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.58e4
  • 1.58e4
32.90
  • 32.90
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.67e4
  • 1.67e4
  • 1.69e4
29.32
  • 29.32
  • 28.46
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.67e4
  • 1.67e4
29.14
  • 29.14
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.69e4
  • 1.69e4
28.39
  • 28.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000008392.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000008392.

Cross-references

EnsemblENSSSCG00000008392 (BCL11A)
HGNCHGNC:13221 (BCL11A)
EMBLCU463236, CU915648
Uniprot/SPTREMBLF2Z5U2, F2Z5U2_PIG

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