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S. scrofa Gene: SF3B6 - ENSSSCG00000008587 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000008587
NameSF3B6
Descriptionsplicing factor 3b subunit 6 [Source:HGNC Symbol;Acc:HGNC:30096]
OrganismSus scrofa (pig)
Synonym(s)cgi-110, ht006, p14, sap14a, sf3b14a
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
813
  • 813
96.56
  • 96.56
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
911
  • 911
96.14
  • 96.14
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.23e3
  • 1.23e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.26e3
  • 1.26e3
94.65
  • 94.65
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.40e3
  • 1.40e3
94.08
  • 94.08
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.46e3
  • 1.46e3
93.81
  • 93.81
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.47e3
  • 1.47e3
93.76
  • 93.76
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.47e3
  • 1.47e3
93.76
  • 93.76
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.48e3
  • 1.48e3
93.72
  • 93.72
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.52e3
  • 1.52e3
93.55
  • 93.55
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.55e3
  • 1.55e3
93.44
  • 93.44
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.56e3
  • 1.56e3
93.41
  • 93.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.57e3
  • 1.57e3
  • 3.24e3
  • 5.31e3
93.36
  • 93.36
  • 86.29
  • 77.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
1.57e3
  • 1.57e3
  • 1.59e3
  • 3.06e3
93.34
  • 93.34
  • 93.25
  • 87.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
1.62e3
  • 1.62e3
  • 1.89e3
  • 3.07e3
93.12
  • 93.12
  • 91.99
  • 87.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.65e3
  • 1.65e3
93.00
  • 93.00
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.70e3
  • 1.70e3
92.81
  • 92.81
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.74e3
  • 1.74e3
92.61
  • 92.61
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.78e3
  • 1.78e3
92.45
  • 92.45
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.79e3
  • 1.79e3
92.41
  • 92.41
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.85e3
  • 1.85e3
92.16
  • 92.16
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.86e3
  • 1.86e3
92.14
  • 92.14
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.88e3
  • 1.88e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.90e3
  • 1.90e3
91.97
  • 91.97
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.91e3
  • 1.91e3
  • 4.92e3
91.91
  • 91.91
  • 79.17
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.91e3
  • 1.91e3
  • 2.33e3
  • 2.74e3
91.89
  • 91.89
  • 90.14
  • 88.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.94e3
  • 1.94e3
91.79
  • 91.79
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.97e3
  • 1.97e3
  • 5.05e3
91.66
  • 91.66
  • 78.61
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
2.06e3
  • 2.06e3
91.29
  • 91.29
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
2.09e3
  • 2.09e3
91.15
  • 91.15
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
2.12e3
  • 2.12e3
91.01
  • 91.01
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.14e3
  • 2.14e3
  • 2.45e3
90.93
  • 90.93
  • 89.62
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.15e3
  • 2.15e3
  • 2.86e3
90.90
  • 90.90
  • 87.89
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
2.16e3
  • 2.16e3
90.84
  • 90.84
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
2.24e3
  • 2.24e3
90.49
  • 90.49
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
2.28e3
  • 2.28e3
90.35
  • 90.35
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
2.35e3
  • 2.35e3
  • 4.12e3
  • 5.37e3
90.05
  • 90.05
  • 82.52
  • 77.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
2.36e3
  • 2.36e3
90.02
  • 90.02
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
2.36e3
  • 2.36e3
  • 5.71e3
  • 1.24e4
89.99
  • 89.99
  • 75.81
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
2.42e3
  • 2.42e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
2.53e3
  • 2.53e3
89.28
  • 89.28
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
2.55e3
  • 2.55e3
89.18
  • 89.18
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
2.66e3
  • 2.66e3
  • 3.41e3
  • 4.87e3
  • 5.12e3
88.73
  • 88.73
  • 85.54
  • 79.38
  • 78.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
2.73e3
  • 2.73e3
88.43
  • 88.43
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
3.06e3
  • 3.06e3
  • 3.26e3
  • 3.32e3
  • 3.38e3
  • 3.40e3
87.03
  • 87.03
  • 86.18
  • 85.92
  • 85.66
  • 85.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
3.11e3
  • 3.11e3
  • 4.76e3
86.82
  • 86.82
  • 79.84
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.64e3
  • 3.64e3
  • 4.35e3
84.60
  • 84.60
  • 81.55
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.79e3
  • 3.79e3
83.95
  • 83.95
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.60e3
  • 4.60e3
80.49
  • 80.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000008587.

Cross-references

EnsemblENSSSCG00000008587 (SF3B6)
HGNCHGNC:30096 (SF3B6)
EMBLCU928810
Uniprot/SPTREMBLF2Z5F1, F2Z5F1_PIG

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