We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

S. scrofa Gene: AFP - ENSSSCG00000008949 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000008949
NameAFP
DescriptionAlpha-fetoprotein [Source:UniProtKB/Swiss-Prot;Acc:Q8MJ76]
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • UBERON:0000104life cycle
240
  • 240
98.99
  • 98.99
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.06e4
  • 1.06e4
55.10
  • 55.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.17e4
  • 1.17e4
  • 1.39e4
  • 2.06e4
50.20
  • 50.20
  • 41.10
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
48.76
  • 48.76
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.27e4
  • 1.27e4
46.14
  • 46.14
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.62e4
  • 1.62e4
31.48
  • 31.48
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.65e4
  • 1.65e4
  • 1.96e4
30.12
  • 30.12
  • 16.99
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.69e4
  • 1.69e4
28.19
  • 28.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000008949.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Sarcopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000008949.

Cross-references

EnsemblENSSSCG00000008949 (AFP)
EMBLAF517770
Uniprot/SWISSPROTFETA_PIG, Q8MJ76

Do not show this banner again