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S. scrofa Gene: FHDC1 - ENSSSCG00000009011 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000009011
NameFHDC1
DescriptionFH2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29363]
OrganismSus scrofa (pig)
Synonym(s)kiaa1727
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.20e3
  • 8.20e3
  • 1.08e4
  • 1.19e4
65.24
  • 65.24
  • 54.27
  • 49.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
9.84e3
  • 9.84e3
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.57
  • 51.57
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
48.65
  • 48.65
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.54
  • 47.54
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.60e4
47.51
  • 47.51
  • 32.27
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
47.35
  • 47.35
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.90
  • 45.90
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
45.55
  • 45.55
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.30e4
  • 1.30e4
  • 1.53e4
45.06
  • 45.06
  • 35.00
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
44.92
  • 44.92
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.72
  • 44.72
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
  • 1.42e4
  • 1.44e4
  • 1.46e4
44.09
  • 44.09
  • 39.66
  • 39.07
  • 37.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.32e4
  • 1.32e4
  • 1.33e4
44.01
  • 44.01
  • 43.70
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
  • 1.35e4
43.99
  • 43.99
  • 42.70
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
  • 1.33e4
  • 1.34e4
  • 1.38e4
  • 1.42e4
43.84
  • 43.84
  • 43.68
  • 43.07
  • 41.32
  • 39.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.70
  • 43.70
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.34e4
  • 1.34e4
43.03
  • 43.03
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
40.94
  • 40.94
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.39e4
  • 1.39e4
40.92
  • 40.92
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.42e4
  • 1.42e4
39.73
  • 39.73
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
39.68
  • 39.68
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
  • 1.45e4
  • 1.49e4
39.68
  • 39.68
  • 38.63
  • 36.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
39.61
  • 39.61
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.62
  • 38.62
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.45e4
  • 1.45e4
38.55
  • 38.55
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.40
  • 38.40
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.37
  • 38.37
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
37.48
  • 37.48
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.49e4
  • 1.49e4
36.95
  • 36.95
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
34.57
  • 34.57
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.59e4
  • 1.59e4
32.75
  • 32.75
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
  • 1.62e4
32.36
  • 32.36
  • 31.17
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.61e4
  • 1.61e4
31.70
  • 31.70
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000009011.

Cross-references

EnsemblENSSSCG00000009011 (FHDC1)
HGNCHGNC:29363 (FHDC1)
EMBLFP067352
Uniprot/SPTREMBLF1RSA9, F1RSA9_PIG

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