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S. scrofa Gene: SYNPO2 - ENSSSCG00000009111 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000009111
NameSYNPO2
Descriptionsynaptopodin 2 [Source:HGNC Symbol;Acc:HGNC:17732]
OrganismSus scrofa (pig)
Synonym(s)myopodin
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
211
  • 211
99.11
  • 99.11
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
278
  • 278
  • 315
  • 343
  • 543
  • 1.56e3
98.83
  • 98.83
  • 98.67
  • 98.55
  • 97.70
  • 93.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
374
  • 374
98.42
  • 98.42
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
475
  • 475
97.99
  • 97.99
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
568
  • 568
97.60
  • 97.60
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
592
  • 592
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.16e3
  • 1.16e3
  • 2.14e3
  • 2.99e3
95.09
  • 95.09
  • 90.92
  • 87.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.24e3
  • 1.24e3
94.76
  • 94.76
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.89e3
  • 1.89e3
  • 6.33e3
  • 1.24e4
91.98
  • 91.98
  • 73.17
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.90e3
  • 1.90e3
91.94
  • 91.94
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
2.00e3
  • 2.00e3
  • 2.78e3
  • 7.21e3
91.53
  • 91.53
  • 88.22
  • 69.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
2.30e3
  • 2.30e3
  • 3.13e3
  • 6.12e3
90.25
  • 90.25
  • 86.74
  • 74.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
2.53e3
  • 2.53e3
89.28
  • 89.28
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.94e3
  • 2.94e3
  • 4.70e3
  • 6.38e3
87.54
  • 87.54
  • 80.07
  • 72.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
2.99e3
  • 2.99e3
  • 3.93e3
87.33
  • 87.33
  • 83.35
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
3.01e3
  • 3.01e3
87.24
  • 87.24
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
5.55e3
  • 5.55e3
76.48
  • 76.48
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
5.59e3
  • 5.59e3
76.29
  • 76.29
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
6.29e3
  • 6.29e3
  • 7.09e3
73.34
  • 73.34
  • 69.95
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
6.31e3
  • 6.31e3
  • 6.85e3
73.26
  • 73.26
  • 70.96
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
6.60e3
  • 6.60e3
  • 1.21e4
72.03
  • 72.03
  • 48.70
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
6.72e3
  • 6.72e3
71.53
  • 71.53
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
6.76e3
  • 6.76e3
71.35
  • 71.35
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
7.44e3
  • 7.44e3
68.47
  • 68.47
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.90e3
  • 7.90e3
  • 1.21e4
66.53
  • 66.53
  • 48.66
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
8.16e3
  • 8.16e3
65.43
  • 65.43
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.17e3
  • 8.17e3
  • 1.12e4
  • 1.19e4
65.37
  • 65.37
  • 52.48
  • 49.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
8.53e3
  • 8.53e3
  • 8.96e3
  • 9.39e3
  • 1.01e4
63.84
  • 63.84
  • 62.02
  • 60.19
  • 57.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.55e3
  • 8.55e3
63.75
  • 63.75
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
8.68e3
  • 8.68e3
63.22
  • 63.22
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
9.62e3
  • 9.62e3
59.23
  • 59.23
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
9.72e3
  • 9.72e3
58.79
  • 58.79
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.58
  • 52.58
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
51.94
  • 51.94
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.30
  • 50.30
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.27
  • 50.27
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.26
  • 50.26
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.21e4
  • 1.21e4
48.78
  • 48.78
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.23e4
  • 1.23e4
47.87
  • 47.87
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.32
  • 47.32
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.33
  • 46.33
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.56
  • 45.56
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.29e4
  • 1.29e4
45.42
  • 45.42
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
44.61
  • 44.61
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
40.96
  • 40.96
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.73
  • 35.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000009111.

Cross-references

EnsemblENSSSCG00000009111 (SYNPO2)
HGNCHGNC:17732 (SYNPO2)
EMBLCU915319, FP102332
Uniprot/SPTREMBLF1S156, F1S156_PIG

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