S. scrofa Gene: SLC39A8 - ENSSSCG00000009169 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000009169
NameSLC39A8
Descriptionsolute carrier family 39 (zinc transporter), member 8 [Source:HGNC Symbol;Acc:HGNC:20862]
OrganismSus scrofa (pig)
Synonym(s)bigm103
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
853
  • 853
96.39
  • 96.39
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.13e3
  • 1.13e3
  • 4.76e3
95.21
  • 95.21
  • 79.83
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.41e3
  • 1.41e3
  • 2.06e3
  • 2.19e3
94.01
  • 94.01
  • 91.28
  • 90.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.46e3
  • 1.46e3
93.84
  • 93.84
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.87e3
  • 1.87e3
  • 3.64e3
  • 5.31e3
92.06
  • 92.06
  • 84.57
  • 77.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.34e3
  • 2.34e3
  • 2.42e3
  • 4.33e3
90.08
  • 90.08
  • 89.72
  • 81.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
2.42e3
  • 2.42e3
89.73
  • 89.73
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
3.25e3
  • 3.25e3
86.24
  • 86.24
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
3.29e3
  • 3.29e3
  • 7.14e3
  • 1.24e4
86.05
  • 86.05
  • 69.72
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
3.63e3
  • 3.63e3
84.60
  • 84.60
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
5.72e3
  • 5.72e3
  • 6.28e3
75.75
  • 75.75
  • 73.37
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
6.59e3
  • 6.59e3
72.07
  • 72.07
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
7.90e3
  • 7.90e3
66.53
  • 66.53
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
8.19e3
  • 8.19e3
65.27
  • 65.27
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.56e3
  • 8.56e3
63.71
  • 63.71
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.01e4
  • 1.01e4
  • 1.22e4
  • 1.24e4
57.16
  • 57.16
  • 48.24
  • 47.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.02e4
  • 1.02e4
  • 1.44e4
56.75
  • 56.75
  • 38.75
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
56.60
  • 56.60
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.42
  • 53.42
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.32
  • 50.32
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.17e4
  • 1.17e4
50.31
  • 50.31
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
  • 1.29e4
50.18
  • 50.18
  • 45.45
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.20e4
  • 1.20e4
49.01
  • 49.01
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
1.20e4
  • 1.20e4
  • 1.22e4
  • 1.24e4
  • 1.37e4
  • 1.48e4
48.98
  • 48.98
  • 48.28
  • 47.42
  • 41.76
  • 37.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.93
  • 47.93
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
47.27
  • 47.27
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
47.23
  • 47.23
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.26e4
  • 1.26e4
46.73
  • 46.73
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.28e4
  • 1.28e4
45.85
  • 45.85
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.54
  • 45.54
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.14
  • 45.14
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.51
  • 41.51
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.22
  • 41.22
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
40.99
  • 40.99
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.39e4
  • 1.39e4
  • 1.40e4
  • 1.46e4
  • 1.51e4
40.94
  • 40.94
  • 40.84
  • 38.16
  • 36.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
  • 1.46e4
39.89
  • 39.89
  • 38.19
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
38.88
  • 38.88
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.46e4
  • 1.46e4
37.99
  • 37.99
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.47e4
  • 1.47e4
37.52
  • 37.52
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
37.24
  • 37.24
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
36.06
  • 36.06
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
36.03
  • 36.03
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.64
  • 35.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000009169.

Cross-references

EnsemblENSSSCG00000009169 (SLC39A8)
HGNCHGNC:20862 (SLC39A8)
EMBLCU582967
Uniprot/SPTREMBLF1S103, F1S103_PIG

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