S. scrofa Gene: LECT1 - ENSSSCG00000009442 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000009442
NameLECT1
Descriptionleukocyte cell derived chemotaxin 1 [Source:HGNC Symbol;Acc:HGNC:17005]
OrganismSus scrofa (pig)
Synonym(s)bricd3, chm-i, chm1, chondromodulin, myets1
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.69e3
  • 4.69e3
80.13
  • 80.13
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
7.15e3
  • 7.15e3
69.68
  • 69.68
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.43e3
  • 7.43e3
  • 1.22e4
68.49
  • 68.49
  • 48.46
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
7.49e3
  • 7.49e3
68.23
  • 68.23
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
7.71e3
  • 7.71e3
67.32
  • 67.32
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
8.01e3
  • 8.01e3
66.04
  • 66.04
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
8.68e3
  • 8.68e3
63.23
  • 63.23
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
9.31e3
  • 9.31e3
60.52
  • 60.52
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
9.40e3
  • 9.40e3
60.15
  • 60.15
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.01e4
  • 1.01e4
57.25
  • 57.25
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
  • 1.13e4
  • 1.23e4
  • 1.70e4
56.92
  • 56.92
  • 51.98
  • 47.78
  • 28.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
  • 1.28e4
52.09
  • 52.09
  • 45.78
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
49.24
  • 49.24
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.22e4
  • 1.22e4
48.48
  • 48.48
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.57e4
47.51
  • 47.51
  • 33.64
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.42
  • 46.42
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.41
  • 45.41
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
  • 1.41e4
40.85
  • 40.85
  • 40.11
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
  • 1.79e4
39.66
  • 39.66
  • 24.04
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
36.12
  • 36.12
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.55e4
  • 1.55e4
  • 1.93e4
34.37
  • 34.37
  • 17.98
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
32.48
  • 32.48
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
  • 1.94e4
30.21
  • 30.21
  • 17.92
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
1.67e4
  • 1.67e4
29.02
  • 29.02
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.72e4
  • 1.72e4
  • 1.78e4
  • 1.92e4
  • 2.03e4
27.26
  • 27.26
  • 24.73
  • 18.81
  • 13.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.81e4
  • 1.81e4
23.31
  • 23.31
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.81e4
  • 1.81e4
23.31
  • 23.31
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000009442.

Cross-references

EnsemblENSSSCG00000009442 (LECT1)
HGNCHGNC:17005 (LECT1)
EMBLFP236201
Uniprot/SPTREMBLF1RJ72, F1RJ72_PIG

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