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S. scrofa Gene: - ENSSSCG00000009677 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000009677
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
3.18e3
  • 3.18e3
  • 1.28e4
  • 1.41e4
  • 1.83e4
86.53
  • 86.53
  • 45.81
  • 40.38
  • 22.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
4.48e3
  • 4.48e3
81.00
  • 81.00
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
6.75e3
  • 6.75e3
  • 1.10e4
  • 2.18e4
71.39
  • 71.39
  • 53.18
  • 7.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
8.36e3
  • 8.36e3
64.55
  • 64.55
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
9.36e3
  • 9.36e3
60.34
  • 60.34
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
9.82e3
  • 9.82e3
  • 1.77e4
  • 2.16e4
58.38
  • 58.38
  • 25.17
  • 8.32
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.18
  • 57.18
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.05e4
  • 1.05e4
  • 1.48e4
55.43
  • 55.43
  • 37.24
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
54.98
  • 54.98
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
  • 1.41e4
54.49
  • 54.49
  • 40.19
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
53.11
  • 53.11
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.15e4
  • 1.15e4
  • 1.26e4
  • 1.37e4
51.06
  • 51.06
  • 46.70
  • 41.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
  • 1.23e4
  • 1.37e4
  • 1.52e4
49.69
  • 49.69
  • 47.99
  • 42.06
  • 35.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
48.74
  • 48.74
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
48.28
  • 48.28
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.08
  • 48.08
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.68e4
47.51
  • 47.51
  • 28.91
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.24e4
  • 1.24e4
  • 1.32e4
  • 2.06e4
47.24
  • 47.24
  • 44.06
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.29
  • 43.29
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
42.59
  • 42.59
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
42.13
  • 42.13
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
41.95
  • 41.95
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.41e4
  • 1.41e4
40.11
  • 40.11
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
  • 1.65e4
39.94
  • 39.94
  • 30.18
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
38.02
  • 38.02
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.70
  • 35.70
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.53e4
  • 1.53e4
35.28
  • 35.28
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.55e4
  • 1.55e4
34.38
  • 34.38
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.55e4
  • 1.55e4
34.27
  • 34.27
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.73e4
  • 1.73e4
26.77
  • 26.77
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.75e4
  • 1.75e4
25.84
  • 25.84
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.78e4
  • 1.78e4
24.64
  • 24.64
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.81e4
  • 1.81e4
23.48
  • 23.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species6 genesCompare expression
Amniota5 species8 genesCompare expression
Tetrapoda6 species9 genesCompare expression
Euteleostomi7 species10 genesCompare expression
Bilateria14 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000009677.

Paralogs (same species)

Cross-references

EnsemblENSSSCG00000009677
EMBLCT737356
Uniprot/SPTREMBLF1RJQ9, F1RJQ9_PIG

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