S. scrofa Gene: - ENSSSCG00000009999 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000009999
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)11 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
3.43e3
  • 3.43e3
  • 7.18e3
  • 1.10e4
85.45
  • 85.45
  • 69.57
  • 53.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
3.48e3
  • 3.48e3
85.26
  • 85.26
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
3.57e3
  • 3.57e3
  • 4.10e3
  • 4.63e3
84.88
  • 84.88
  • 82.63
  • 80.38
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.64e3
  • 3.64e3
84.56
  • 84.56
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
3.84e3
  • 3.84e3
83.74
  • 83.74
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
3.94e3
  • 3.94e3
83.29
  • 83.29
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
3.99e3
  • 3.99e3
  • 1.05e4
  • 1.24e4
83.11
  • 83.11
  • 55.31
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
4.51e3
  • 4.51e3
80.89
  • 80.89
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
4.52e3
  • 4.52e3
80.86
  • 80.86
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.67e3
  • 4.67e3
  • 9.05e3
80.22
  • 80.22
  • 61.62
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.13e3
  • 5.13e3
  • 8.10e3
  • 1.20e4
78.27
  • 78.27
  • 65.67
  • 49.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
5.20e3
  • 5.20e3
  • 6.69e3
77.96
  • 77.96
  • 71.67
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
6.71e3
  • 6.71e3
71.55
  • 71.55
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
6.86e3
  • 6.86e3
  • 1.16e4
70.94
  • 70.94
  • 50.91
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
7.01e3
  • 7.01e3
  • 7.69e3
  • 1.04e4
70.29
  • 70.29
  • 67.39
  • 55.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
7.11e3
  • 7.11e3
  • 1.04e4
  • 1.10e4
  • 1.22e4
  • 1.45e4
69.87
  • 69.87
  • 55.99
  • 53.31
  • 48.14
  • 38.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.39e3
  • 7.39e3
68.70
  • 68.70
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.52e3
  • 7.52e3
  • 9.99e3
  • 1.17e4
68.13
  • 68.13
  • 57.66
  • 50.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.59e3
  • 7.59e3
  • 9.12e3
  • 1.13e4
  • 1.24e4
67.84
  • 67.84
  • 61.34
  • 52.16
  • 47.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
7.77e3
  • 7.77e3
67.07
  • 67.07
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
7.79e3
  • 7.79e3
66.98
  • 66.98
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
7.98e3
  • 7.98e3
66.16
  • 66.16
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
8.54e3
  • 8.54e3
63.78
  • 63.78
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.56e3
  • 8.56e3
  • 1.05e4
63.73
  • 63.73
  • 55.32
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
8.80e3
  • 8.80e3
62.70
  • 62.70
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
9.21e3
  • 9.21e3
60.97
  • 60.97
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
57.18
  • 57.18
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.02e4
  • 1.02e4
56.72
  • 56.72
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
  • 1.36e4
56.70
  • 56.70
  • 42.36
AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.28
  • 56.28
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.04e4
  • 1.04e4
56.00
  • 56.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
54.85
  • 54.85
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
52.82
  • 52.82
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.70
  • 52.70
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.13e4
  • 1.13e4
51.90
  • 51.90
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.33
  • 51.33
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
50.01
  • 50.01
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.69
  • 48.69
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.52
  • 48.52
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.82
  • 46.82
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.69
  • 45.69
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
44.06
  • 44.06
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
41.91
  • 41.91
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.19
  • 41.19
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.42e4
  • 1.42e4
39.62
  • 39.62
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.66
  • 38.66
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.61
  • 38.61
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
37.27
  • 37.27
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.66
  • 35.66
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Tetrapoda10 species10 genesCompare expression
Euteleostomi11 species11 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000009999.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000009999.

Cross-references

EnsemblENSSSCG00000009999
EMBLCT827833
Uniprot/SPTREMBLF1RFD6, F1RFD6_PIG

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