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S. scrofa Gene: ERCC6 - ENSSSCG00000010391 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000010391
NameERCC6
Descriptionexcision repair cross-complementation group 6 [Source:HGNC Symbol;Acc:HGNC:3438]
OrganismSus scrofa (pig)
Synonym(s)armd5, ckn2, csb, rad26
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
4.73e3
  • 4.73e3
  • 8.17e3
79.94
  • 79.94
  • 65.39
AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
6.12e3
  • 6.12e3
74.06
  • 74.06
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
6.44e3
  • 6.44e3
  • 1.22e4
72.73
  • 72.73
  • 48.18
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.64e3
  • 6.64e3
  • 1.02e4
  • 1.04e4
71.87
  • 71.87
  • 56.80
  • 55.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
7.24e3
  • 7.24e3
69.33
  • 69.33
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.60e3
  • 7.60e3
  • 1.32e4
  • 1.32e4
67.79
  • 67.79
  • 43.94
  • 43.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
7.88e3
  • 7.88e3
  • 1.24e4
  • 1.36e4
66.58
  • 66.58
  • 47.51
  • 42.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
7.92e3
  • 7.92e3
  • 9.90e3
66.43
  • 66.43
  • 58.02
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
8.42e3
  • 8.42e3
  • 1.07e4
  • 1.07e4
  • 1.07e4
  • 1.30e4
64.29
  • 64.29
  • 54.77
  • 54.67
  • 54.61
  • 44.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
8.56e3
  • 8.56e3
63.70
  • 63.70
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
8.81e3
  • 8.81e3
62.64
  • 62.64
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.83e3
  • 8.83e3
  • 1.26e4
62.57
  • 62.57
  • 46.54
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
9.03e3
  • 9.03e3
  • 1.24e4
61.72
  • 61.72
  • 47.24
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
9.13e3
  • 9.13e3
  • 1.11e4
  • 1.18e4
61.31
  • 61.31
  • 52.76
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
9.14e3
  • 9.14e3
61.25
  • 61.25
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
9.24e3
  • 9.24e3
60.83
  • 60.83
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
9.26e3
  • 9.26e3
60.77
  • 60.77
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
9.55e3
  • 9.55e3
59.52
  • 59.52
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
9.63e3
  • 9.63e3
59.20
  • 59.20
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.00e4
  • 1.00e4
57.50
  • 57.50
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.29
  • 57.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
56.39
  • 56.39
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.05e4
  • 1.05e4
  • 1.28e4
  • 1.34e4
55.66
  • 55.66
  • 45.78
  • 43.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.07
  • 55.07
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
55.03
  • 55.03
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.02
  • 55.02
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
54.85
  • 54.85
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
54.44
  • 54.44
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.36
  • 54.36
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.33
  • 54.33
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.09e4
  • 1.09e4
53.84
  • 53.84
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
53.84
  • 53.84
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.72
  • 53.72
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.51
  • 53.51
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
53.00
  • 53.00
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.13e4
  • 1.13e4
52.22
  • 52.22
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.83
  • 51.83
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.76
  • 50.76
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.17e4
  • 1.17e4
50.20
  • 50.20
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.18e4
  • 1.18e4
  • 1.19e4
  • 1.20e4
  • 1.23e4
50.16
  • 50.16
  • 49.37
  • 49.11
  • 47.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
  • 1.19e4
  • 1.24e4
50.00
  • 50.00
  • 49.51
  • 47.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.64
  • 49.64
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.86
  • 48.86
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
47.17
  • 47.17
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.25e4
  • 1.25e4
47.06
  • 47.06
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.86
  • 46.86
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
  • 1.31e4
45.21
  • 45.21
  • 44.67
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000010391.

Cross-references

EnsemblENSSSCG00000010391 (ERCC6)
HGNCHGNC:3438 (ERCC6)
EMBLCT990602, CT990615
Uniprot/SPTREMBLF1SDX0, F1SDX0_PIG

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