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S. scrofa Gene: - ENSSSCG00000010530 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000010530
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
4.94e3
  • 4.94e3
  • 5.48e3
  • 6.97e3
  • 8.97e3
79.07
  • 79.07
  • 76.76
  • 70.47
  • 62.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.62e3
  • 5.62e3
  • 1.05e4
76.17
  • 76.17
  • 55.52
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.67e3
  • 6.67e3
71.75
  • 71.75
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
7.14e3
  • 7.14e3
69.74
  • 69.74
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
8.84e3
  • 8.84e3
62.53
  • 62.53
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
54.64
  • 54.64
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.98
  • 53.98
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.13e4
  • 1.13e4
51.92
  • 51.92
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
49.20
  • 49.20
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.92
  • 48.92
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.72e4
47.51
  • 47.51
  • 27.16
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.71
  • 46.71
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
  • 1.56e4
46.07
  • 46.07
  • 34.04
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.35
  • 44.35
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.35
  • 43.35
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.35e4
  • 1.35e4
42.97
  • 42.97
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.37e4
  • 1.37e4
42.05
  • 42.05
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.38e4
  • 1.38e4
41.66
  • 41.66
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.66
  • 41.66
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
  • 1.86e4
  • 2.16e4
39.65
  • 39.65
  • 21.13
  • 8.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
39.38
  • 39.38
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
39.23
  • 39.23
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
  • 1.66e4
38.85
  • 38.85
  • 29.45
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
  • 1.85e4
  • 2.06e4
37.88
  • 37.88
  • 21.62
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.53e4
  • 1.53e4
35.03
  • 35.03
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
1.56e4
  • 1.56e4
33.73
  • 33.73
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.57e4
  • 1.57e4
33.43
  • 33.43
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
  • 1.75e4
  • 1.78e4
  • 1.83e4
  • 1.84e4
33.22
  • 33.22
  • 25.67
  • 24.42
  • 22.35
  • 22.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.58e4
  • 1.58e4
  • 1.67e4
33.18
  • 33.18
  • 29.42
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.67e4
  • 1.67e4
29.38
  • 29.38
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.76e4
  • 1.76e4
25.58
  • 25.58
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.76e4
  • 1.76e4
25.49
  • 25.49
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.94e4
  • 1.94e4
17.97
  • 17.97
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.94e4
  • 1.94e4
17.64
  • 17.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000010530.

Cross-references

EnsemblENSSSCG00000010530
EMBLFP016035
Uniprot/SPTREMBLF1S8X2, F1S8X2_PIG

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