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S. scrofa Gene: PSD - ENSSSCG00000010581 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000010581
NamePSD
Descriptionpleckstrin and Sec7 domain containing [Source:HGNC Symbol;Acc:HGNC:9507]
OrganismSus scrofa (pig)
Synonym(s)efa6, efa6a, kiaa2011, psd1, tyl
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
778
  • 778
  • 801
  • 860
  • 1.84e3
96.71
  • 96.71
  • 96.61
  • 96.36
  • 92.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.01e3
  • 1.01e3
95.73
  • 95.73
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.03e3
  • 1.03e3
  • 4.14e3
95.63
  • 95.63
  • 82.47
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.55e3
  • 1.55e3
  • 4.88e3
93.44
  • 93.44
  • 79.33
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
2.05e3
  • 2.05e3
91.31
  • 91.31
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
3.10e3
  • 3.10e3
86.87
  • 86.87
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
4.08e3
  • 4.08e3
82.72
  • 82.72
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
6.16e3
  • 6.16e3
73.91
  • 73.91
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
6.30e3
  • 6.30e3
73.29
  • 73.29
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
6.58e3
  • 6.58e3
72.10
  • 72.10
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
7.16e3
  • 7.16e3
69.67
  • 69.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
9.38e3
  • 9.38e3
60.25
  • 60.25
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
9.60e3
  • 9.60e3
59.30
  • 59.30
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.25
  • 57.25
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
  • 1.10e4
57.12
  • 57.12
  • 53.24
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.45
  • 53.45
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.43
  • 48.43
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.65e4
47.51
  • 47.51
  • 29.88
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.39
  • 44.39
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
43.51
  • 43.51
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.46e4
  • 1.60e4
41.64
  • 41.64
  • 38.11
  • 32.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.48e4
  • 1.48e4
37.24
  • 37.24
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.50e4
  • 1.50e4
  • 1.69e4
36.57
  • 36.57
  • 28.51
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
35.07
  • 35.07
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.54e4
  • 1.54e4
34.78
  • 34.78
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
34.68
  • 34.68
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.55e4
  • 1.55e4
34.37
  • 34.37
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.56e4
  • 1.56e4
33.90
  • 33.90
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.56e4
  • 1.56e4
33.76
  • 33.76
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.60e4
  • 1.60e4
  • 1.63e4
32.20
  • 32.20
  • 31.04
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
  • 1.66e4
  • 1.89e4
31.62
  • 31.62
  • 29.56
  • 19.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.66e4
  • 1.66e4
29.58
  • 29.58
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.68e4
  • 1.68e4
  • 1.71e4
  • 1.79e4
28.79
  • 28.79
  • 27.42
  • 24.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.72e4
  • 1.72e4
  • 1.82e4
27.00
  • 27.00
  • 22.72
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000010581.

Cross-references

EnsemblENSSSCG00000010581 (PSD)
HGNCHGNC:9507 (PSD)
EMBLCU498828
Uniprot/SPTREMBLF1S860, F1S860_PIG

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