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S. scrofa Gene: CHMP5 - ENSSSCG00000010995 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000010995
NameCHMP5
Descriptioncharged multivesicular body protein 5 [Source:HGNC Symbol;Acc:HGNC:26942]
OrganismSus scrofa (pig)
Synonym(s)c9orf83, cgi-34, hspc177, snf7dc2, vps60
Orthologs(s)23 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
820
  • 820
  • 1.84e3
96.53
  • 96.53
  • 92.20
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
891
  • 891
  • 3.44e3
96.23
  • 96.23
  • 85.43
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
963
  • 963
  • 4.27e3
  • 1.24e4
95.92
  • 95.92
  • 81.92
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.06e3
  • 1.06e3
  • 2.13e3
95.51
  • 95.51
  • 90.97
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.49e3
  • 1.49e3
  • 2.41e3
  • 3.06e3
93.70
  • 93.70
  • 89.77
  • 87.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.58e3
  • 1.58e3
93.29
  • 93.29
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.78e3
  • 1.78e3
92.47
  • 92.47
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.80e3
  • 1.80e3
92.37
  • 92.37
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.83e3
  • 1.83e3
92.26
  • 92.26
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.85e3
  • 1.85e3
92.17
  • 92.17
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.85e3
  • 1.85e3
92.17
  • 92.17
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.95e3
  • 1.95e3
  • 2.45e3
91.74
  • 91.74
  • 89.63
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.96e3
  • 1.96e3
91.68
  • 91.68
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
2.05e3
  • 2.05e3
91.33
  • 91.33
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.07e3
  • 2.07e3
  • 3.03e3
  • 3.35e3
91.21
  • 91.21
  • 87.16
  • 85.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
2.07e3
  • 2.07e3
91.21
  • 91.21
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.10e3
  • 2.10e3
  • 4.31e3
  • 4.34e3
91.09
  • 91.09
  • 81.73
  • 81.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
2.22e3
  • 2.22e3
90.60
  • 90.60
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
2.23e3
  • 2.23e3
90.54
  • 90.54
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
2.27e3
  • 2.27e3
90.39
  • 90.39
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
2.32e3
  • 2.32e3
90.18
  • 90.18
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
2.33e3
  • 2.33e3
90.15
  • 90.15
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
2.33e3
  • 2.33e3
90.13
  • 90.13
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
2.35e3
  • 2.35e3
  • 3.17e3
  • 3.48e3
  • 3.89e3
  • 4.00e3
90.03
  • 90.03
  • 86.58
  • 85.25
  • 83.51
  • 83.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
2.38e3
  • 2.38e3
  • 2.51e3
  • 2.75e3
  • 3.03e3
89.93
  • 89.93
  • 89.37
  • 88.33
  • 87.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
2.39e3
  • 2.39e3
89.86
  • 89.86
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
2.50e3
  • 2.50e3
89.41
  • 89.41
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
2.56e3
  • 2.56e3
  • 3.43e3
89.14
  • 89.14
  • 85.47
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
2.59e3
  • 2.59e3
89.03
  • 89.03
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
2.59e3
  • 2.59e3
89.03
  • 89.03
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
2.60e3
  • 2.60e3
  • 2.73e3
  • 3.12e3
88.98
  • 88.98
  • 88.44
  • 86.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.60e3
  • 2.60e3
  • 2.63e3
88.96
  • 88.96
  • 88.85
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.64e3
  • 2.64e3
88.83
  • 88.83
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.71e3
  • 2.71e3
  • 2.79e3
  • 3.52e3
88.54
  • 88.54
  • 88.18
  • 85.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
2.87e3
  • 2.87e3
87.84
  • 87.84
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
2.89e3
  • 2.89e3
87.75
  • 87.75
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
2.91e3
  • 2.91e3
87.65
  • 87.65
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
2.99e3
  • 2.99e3
87.31
  • 87.31
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
3.16e3
  • 3.16e3
86.61
  • 86.61
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
3.18e3
  • 3.18e3
86.52
  • 86.52
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
3.19e3
  • 3.19e3
86.47
  • 86.47
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
3.20e3
  • 3.20e3
86.45
  • 86.45
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
3.20e3
  • 3.20e3
86.44
  • 86.44
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.27e3
  • 3.27e3
86.13
  • 86.13
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.42e3
  • 3.42e3
85.50
  • 85.50
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
3.81e3
  • 3.81e3
83.87
  • 83.87
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
5.10e3
  • 5.10e3
78.38
  • 78.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000010995.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000010995.

Cross-references

EnsemblENSSSCG00000010995 (CHMP5)
HGNCHGNC:26942 (CHMP5)
EMBLCU856468
Uniprot/SPTREMBLF1SE87, F1SE87_PIG

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