S. scrofa Gene: VIM - ENSSSCG00000011033 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000011033
NameVIM
Descriptionvimentin [Source:HGNC Symbol;Acc:HGNC:12692]
OrganismSus scrofa (pig)
Synonym(s)f1rwb8, f1rwc0

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
64.1
  • 64.1
  • 76.0
99.72858
  • 99.72858
  • 99.67739
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
113
  • 113
  • 861
99.51613
  • 99.51613
  • 96.30076
AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
121
  • 121
99.48585
  • 99.48585
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
129
  • 129
99.44761
  • 99.44761
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
154
  • 154
99.34188
  • 99.34188
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
154
  • 154
  • 227
99.34188
  • 99.34188
  • 99.02787
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
170
  • 170
99.27314
  • 99.27314
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
175
  • 175
99.25000
  • 99.25000
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
180
  • 180
  • 825
  • 1.18e3
99.22811
  • 99.22811
  • 96.45539
  • 94.91569
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
245
  • 245
98.95126
  • 98.95126
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
329
  • 329
  • 527
98.58913
  • 98.58913
  • 97.73533
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
332
  • 332
98.57635
  • 98.57635
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
374
  • 374
98.39345
  • 98.39345
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
402
  • 402
98.27422
  • 98.27422
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
450
  • 450
98.06865
  • 98.06865
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
472
  • 472
97.97428
  • 97.97428
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
484
  • 484
97.92386
  • 97.92386
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
489
  • 489
97.89896
  • 97.89896
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
531
  • 531
  • 599
  • 1.22e3
97.72140
  • 97.72140
  • 97.42610
  • 94.74067
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
538
  • 538
97.69090
  • 97.69090
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
699
  • 699
96.99845
  • 96.99845
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
710
  • 710
96.95032
  • 96.95032
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
713
  • 713
96.93840
  • 96.93840
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
719
  • 719
96.91023
  • 96.91023
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
833
  • 833
96.42094
  • 96.42094
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
883
  • 883
96.20802
  • 96.20802
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
959
  • 959
95.87857
  • 95.87857
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
966
  • 966
95.84704
  • 95.84704
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.01e3
  • 1.01e3
95.68135
  • 95.68135
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.13e3
  • 1.13e3
95.16337
  • 95.16337
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.39e3
  • 1.39e3
  • 1.90e3
94.02624
  • 94.02624
  • 91.81865
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.65e3
  • 1.65e3
92.91952
  • 92.91952
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.75e3
  • 1.75e3
  • 1.92e3
  • 2.54e3
92.45957
  • 92.45957
  • 91.75813
  • 89.08723
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
2.21e3
  • 2.21e3
90.47772
  • 90.47772
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
3.40e3
  • 3.40e3
85.39255
  • 85.39255
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
3.68e3
  • 3.68e3
84.16393
  • 84.16393
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
4.12e3
  • 4.12e3
82.30166
  • 82.30166
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
4.19e3
  • 4.19e3
81.98408
  • 81.98408
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
4.73e3
  • 4.73e3
79.67507
  • 79.67507
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCU570641
EnsemblENSSSCG00000011033 (VIM)
HGNCHGNC:12692 (VIM)
Uniprot/SWISSPROTP02543, VIME_PIG

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