S. scrofa Gene: VIM - ENSSSCG00000011033 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000011033
NameVIM
Descriptionvimentin [Source:HGNC Symbol;Acc:HGNC:12692]
OrganismSus scrofa (pig)
Synonym(s)f1rwb8, f1rwc0

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
154
  • 154
99.24233
  • 99.24233
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
329
  • 329
98.37571
  • 98.37571
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
484
  • 484
97.61017
  • 97.61017
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.01e3
  • 1.01e3
95.02810
  • 95.02810
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.39e3
  • 1.39e3
93.12299
  • 93.12299
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.66e3
  • 1.66e3
  • 1.75e3
91.80157
  • 91.80157
  • 91.31899
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCU570641
EnsemblENSSSCG00000011033 (VIM)
HGNCHGNC:12692 (VIM)
Uniprot/SWISSPROTP02543, VIME_PIG

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