S. scrofa Gene: TNNC1 - ENSSSCG00000011441 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000011441
NameTNNC1
DescriptionTroponin C, slow skeletal and cardiac muscles [Source:UniProtKB/Swiss-Prot;Acc:P63317]
OrganismSus scrofa (pig)
Synonym(s)o14800, p02590, p04463, q4g1m5, tnnc
Orthologs(s)18 orthologs
Paralog(s)22 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
12.0
  • 12.0
  • 15.8
  • 19.3
99.95
  • 99.95
  • 99.94
  • 99.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
17.0
  • 17.0
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
26.5
  • 26.5
99.89
  • 99.89
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
31.0
  • 31.0
99.87
  • 99.87
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
33.2
  • 33.2
  • 34.6
  • 36.8
  • 49.0
  • 82.1
99.86
  • 99.86
  • 99.86
  • 99.85
  • 99.80
  • 99.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
36.4
  • 36.4
99.85
  • 99.85
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
42.9
  • 42.9
99.82
  • 99.82
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
468
  • 468
  • 9.77e3
  • 1.24e4
98.02
  • 98.02
  • 58.59
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.56e3
  • 1.56e3
93.38
  • 93.38
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
2.05e3
  • 2.05e3
91.30
  • 91.30
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
3.15e3
  • 3.15e3
86.65
  • 86.65
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
3.55e3
  • 3.55e3
  • 1.46e4
84.95
  • 84.95
  • 38.06
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.24e3
  • 4.24e3
  • 1.10e4
82.01
  • 82.01
  • 53.37
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
5.26e3
  • 5.26e3
77.70
  • 77.70
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
7.36e3
  • 7.36e3
  • 1.49e4
  • 1.54e4
  • 1.70e4
68.79
  • 68.79
  • 36.94
  • 34.58
  • 27.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
8.24e3
  • 8.24e3
65.08
  • 65.08
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
8.73e3
  • 8.73e3
62.99
  • 62.99
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
9.55e3
  • 9.55e3
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
54.38
  • 54.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.13e4
  • 1.13e4
  • 1.45e4
52.20
  • 52.20
  • 38.69
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.89
  • 51.89
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.19e4
  • 1.19e4
  • 1.57e4
49.49
  • 49.49
  • 33.64
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
  • 1.28e4
  • 1.29e4
47.22
  • 47.22
  • 45.64
  • 45.21
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.90
  • 44.90
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.56
  • 43.56
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
41.08
  • 41.08
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.52
  • 40.52
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
35.08
  • 35.08
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.54e4
  • 1.54e4
34.80
  • 34.80
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.54e4
  • 1.54e4
34.59
  • 34.59
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.61e4
  • 1.61e4
31.85
  • 31.85
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
30.74
  • 30.74
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.66e4
  • 1.66e4
29.63
  • 29.63
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.73e4
  • 1.73e4
26.64
  • 26.64
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.85e4
  • 1.85e4
21.79
  • 21.79
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.89e4
  • 1.89e4
20.06
  • 20.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000011441.

Paralogs (same species)

Cross-references

EnsemblENSSSCG00000011441 (TNNC1)
EMBLAY958072
Uniprot/SWISSPROTP63317, TNNC1_PIG

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