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S. scrofa Gene: - ENSSSCG00000011542 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000011542
Name-
Description-
OrganismSus scrofa (pig)
Synonym(s)thumpd3
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
4.25e3
  • 4.25e3
  • 5.18e3
  • 5.49e3
  • 6.66e3
  • 8.78e3
82.00
  • 82.00
  • 78.05
  • 76.72
  • 71.77
  • 62.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
4.53e3
  • 4.53e3
  • 8.41e3
  • 8.47e3
80.80
  • 80.80
  • 64.36
  • 64.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
4.85e3
  • 4.85e3
  • 5.19e3
79.44
  • 79.44
  • 77.99
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
5.02e3
  • 5.02e3
78.71
  • 78.71
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
5.15e3
  • 5.15e3
78.16
  • 78.16
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
5.21e3
  • 5.21e3
77.91
  • 77.91
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
5.34e3
  • 5.34e3
77.36
  • 77.36
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
5.39e3
  • 5.39e3
77.17
  • 77.17
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
5.43e3
  • 5.43e3
77.00
  • 77.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
5.48e3
  • 5.48e3
76.78
  • 76.78
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
5.51e3
  • 5.51e3
76.65
  • 76.65
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.94e3
  • 5.94e3
  • 9.14e3
74.83
  • 74.83
  • 61.26
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
5.97e3
  • 5.97e3
74.72
  • 74.72
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
5.97e3
  • 5.97e3
74.68
  • 74.68
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
6.17e3
  • 6.17e3
73.86
  • 73.86
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
6.17e3
  • 6.17e3
73.84
  • 73.84
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
6.17e3
  • 6.17e3
73.83
  • 73.83
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
6.19e3
  • 6.19e3
73.76
  • 73.76
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
6.30e3
  • 6.30e3
73.31
  • 73.31
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
6.30e3
  • 6.30e3
73.28
  • 73.28
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
6.32e3
  • 6.32e3
73.20
  • 73.20
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
6.34e3
  • 6.34e3
  • 1.01e4
  • 1.24e4
73.14
  • 73.14
  • 57.30
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
6.44e3
  • 6.44e3
  • 9.25e3
72.70
  • 72.70
  • 60.81
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
6.48e3
  • 6.48e3
72.53
  • 72.53
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
6.49e3
  • 6.49e3
72.51
  • 72.51
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
6.49e3
  • 6.49e3
  • 7.60e3
72.48
  • 72.48
  • 67.77
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
6.53e3
  • 6.53e3
  • 6.69e3
  • 7.87e3
72.32
  • 72.32
  • 71.62
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
6.69e3
  • 6.69e3
71.64
  • 71.64
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
6.73e3
  • 6.73e3
  • 9.96e3
71.49
  • 71.49
  • 57.79
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
6.73e3
  • 6.73e3
71.48
  • 71.48
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.86e3
  • 6.86e3
70.93
  • 70.93
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
6.91e3
  • 6.91e3
70.69
  • 70.69
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.09e3
  • 7.09e3
  • 8.45e3
  • 9.26e3
69.97
  • 69.97
  • 64.18
  • 60.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
7.14e3
  • 7.14e3
  • 7.70e3
  • 8.24e3
69.73
  • 69.73
  • 67.38
  • 65.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.21e3
  • 7.21e3
  • 8.59e3
  • 9.90e3
69.43
  • 69.43
  • 63.61
  • 58.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.30e3
  • 7.30e3
69.08
  • 69.08
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
7.45e3
  • 7.45e3
68.43
  • 68.43
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
7.54e3
  • 7.54e3
68.04
  • 68.04
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
7.58e3
  • 7.58e3
67.88
  • 67.88
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
7.83e3
  • 7.83e3
66.83
  • 66.83
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
8.21e3
  • 8.21e3
65.21
  • 65.21
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
8.36e3
  • 8.36e3
64.57
  • 64.57
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
8.76e3
  • 8.76e3
  • 8.98e3
  • 1.13e4
  • 1.14e4
62.89
  • 62.89
  • 61.95
  • 51.90
  • 51.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
9.21e3
  • 9.21e3
60.98
  • 60.98
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
9.61e3
  • 9.61e3
  • 9.62e3
59.26
  • 59.26
  • 59.23
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.38
  • 57.38
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
53.95
  • 53.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species7 genesCompare expression
Boreoeutheria12 species14 genesCompare expression
Theria13 species15 genesCompare expression
Mammalia14 species16 genesCompare expression
Amniota16 species18 genesCompare expression
Tetrapoda17 species19 genesCompare expression
Euteleostomi18 species20 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000011542.

Cross-references

EnsemblENSSSCG00000011542
EMBLCU929960
Uniprot/SPTREMBLF1SR31, F1SR31_PIG

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