S. scrofa Gene: - ENSSSCG00000011729 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000011729
Name-
Description-
OrganismSus scrofa (pig)
Synonym(s)schip1
Orthologs(s)11 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
963
  • 963
95.92
  • 95.92
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.18e3
  • 1.18e3
95.00
  • 95.00
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
1.18e3
  • 1.18e3
  • 1.32e3
  • 1.91e3
  • 1.99e3
  • 4.00e3
94.99
  • 94.99
  • 94.40
  • 91.90
  • 91.58
  • 83.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.35e3
  • 1.35e3
  • 2.19e3
94.27
  • 94.27
  • 90.71
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.36e3
  • 1.36e3
94.25
  • 94.25
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.42e3
  • 1.42e3
94.00
  • 94.00
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.46e3
  • 1.46e3
  • 1.61e3
  • 1.93e3
  • 2.04e3
93.83
  • 93.83
  • 93.19
  • 91.84
  • 91.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.67e3
  • 1.67e3
92.94
  • 92.94
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.87e3
  • 1.87e3
92.09
  • 92.09
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.88e3
  • 1.88e3
  • 3.04e3
  • 3.21e3
92.03
  • 92.03
  • 87.14
  • 86.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.89e3
  • 1.89e3
92.01
  • 92.01
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.00e3
  • 2.00e3
  • 4.21e3
91.53
  • 91.53
  • 82.14
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
2.00e3
  • 2.00e3
91.51
  • 91.51
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
2.15e3
  • 2.15e3
90.90
  • 90.90
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
2.82e3
  • 2.82e3
88.04
  • 88.04
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
3.07e3
  • 3.07e3
86.99
  • 86.99
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
3.26e3
  • 3.26e3
86.17
  • 86.17
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
3.27e3
  • 3.27e3
86.15
  • 86.15
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
3.62e3
  • 3.62e3
84.64
  • 84.64
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
3.97e3
  • 3.97e3
83.16
  • 83.16
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
4.08e3
  • 4.08e3
82.70
  • 82.70
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
4.27e3
  • 4.27e3
81.92
  • 81.92
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
4.97e3
  • 4.97e3
  • 1.10e4
  • 1.13e4
78.94
  • 78.94
  • 53.53
  • 52.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
5.00e3
  • 5.00e3
  • 7.48e3
  • 8.56e3
78.82
  • 78.82
  • 68.29
  • 63.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
5.17e3
  • 5.17e3
  • 7.66e3
78.08
  • 78.08
  • 67.54
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
6.00e3
  • 6.00e3
  • 8.86e3
  • 1.09e4
74.56
  • 74.56
  • 62.43
  • 53.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
6.06e3
  • 6.06e3
  • 7.16e3
  • 1.24e4
74.33
  • 74.33
  • 69.65
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
6.88e3
  • 6.88e3
70.82
  • 70.82
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
7.84e3
  • 7.84e3
66.78
  • 66.78
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
7.98e3
  • 7.98e3
66.17
  • 66.17
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.46e3
  • 8.46e3
  • 9.52e3
64.13
  • 64.13
  • 59.66
AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
8.60e3
  • 8.60e3
63.56
  • 63.56
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
8.80e3
  • 8.80e3
62.69
  • 62.69
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
8.94e3
  • 8.94e3
62.12
  • 62.12
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
9.50e3
  • 9.50e3
  • 9.52e3
59.75
  • 59.75
  • 59.64
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
9.62e3
  • 9.62e3
59.24
  • 59.24
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.04e4
  • 1.04e4
55.87
  • 55.87
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.57
  • 55.57
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
52.86
  • 52.86
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
52.40
  • 52.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
  • 1.24e4
  • 1.52e4
49.58
  • 49.58
  • 47.64
  • 35.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.33
  • 45.33
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.25
  • 43.25
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.26
  • 41.26
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.62
  • 40.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria2 species2 genesCompare expression
Boreoeutheria6 species6 genesCompare expression
Theria7 species7 genesCompare expression
Mammalia8 species8 genesCompare expression
Amniota9 species9 genesCompare expression
Tetrapoda10 species10 genesCompare expression
Euteleostomi11 species11 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000011729.

Cross-references

EnsemblENSSSCG00000011729
EMBLFP085528
Uniprot/SPTREMBLF1SJL8, F1SJL8_PIG

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