S. scrofa Gene: - ENSSSCG00000011830 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000011830
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
501
  • 501
  • 1.02e3
97.88
  • 97.88
  • 95.67
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
663
  • 663
  • 1.58e3
  • 2.49e3
  • 2.93e3
  • 3.76e3
97.19
  • 97.19
  • 93.33
  • 89.45
  • 87.57
  • 84.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
985
  • 985
  • 4.88e3
95.83
  • 95.83
  • 79.31
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
996
  • 996
95.78
  • 95.78
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.29e3
  • 1.29e3
  • 5.93e3
  • 7.34e3
94.54
  • 94.54
  • 74.87
  • 68.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.47e3
  • 1.47e3
93.77
  • 93.77
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
2.37e3
  • 2.37e3
  • 4.34e3
  • 1.12e4
89.96
  • 89.96
  • 81.62
  • 52.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
2.51e3
  • 2.51e3
  • 4.20e3
89.35
  • 89.35
  • 82.18
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
2.61e3
  • 2.61e3
88.94
  • 88.94
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.21e3
  • 3.21e3
86.42
  • 86.42
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.30e3
  • 3.30e3
  • 5.49e3
86.01
  • 86.01
  • 76.72
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
3.40e3
  • 3.40e3
85.59
  • 85.59
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
3.65e3
  • 3.65e3
  • 5.14e3
  • 1.24e4
84.52
  • 84.52
  • 78.23
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
3.74e3
  • 3.74e3
84.17
  • 84.17
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.90e3
  • 3.90e3
  • 7.02e3
  • 8.37e3
83.46
  • 83.46
  • 70.24
  • 64.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.92e3
  • 3.92e3
  • 9.34e3
83.39
  • 83.39
  • 60.40
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.00e3
  • 4.00e3
  • 4.09e3
  • 5.46e3
83.04
  • 83.04
  • 82.67
  • 76.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
4.01e3
  • 4.01e3
  • 4.20e3
  • 4.36e3
  • 8.15e3
83.01
  • 83.01
  • 82.18
  • 81.53
  • 65.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
4.12e3
  • 4.12e3
  • 4.17e3
  • 5.33e3
82.54
  • 82.54
  • 82.32
  • 77.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
4.74e3
  • 4.74e3
79.92
  • 79.92
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
4.89e3
  • 4.89e3
79.28
  • 79.28
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
5.12e3
  • 5.12e3
78.29
  • 78.29
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
5.52e3
  • 5.52e3
76.60
  • 76.60
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
6.41e3
  • 6.41e3
72.81
  • 72.81
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
6.72e3
  • 6.72e3
71.52
  • 71.52
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
7.24e3
  • 7.24e3
69.32
  • 69.32
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
7.45e3
  • 7.45e3
68.41
  • 68.41
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
7.90e3
  • 7.90e3
66.52
  • 66.52
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
8.02e3
  • 8.02e3
66.00
  • 66.00
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.13e3
  • 8.13e3
  • 1.15e4
65.54
  • 65.54
  • 51.10
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
8.27e3
  • 8.27e3
64.95
  • 64.95
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
8.73e3
  • 8.73e3
63.01
  • 63.01
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.83e3
  • 8.83e3
62.58
  • 62.58
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
9.05e3
  • 9.05e3
61.65
  • 61.65
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
9.41e3
  • 9.41e3
60.10
  • 60.10
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
9.45e3
  • 9.45e3
59.93
  • 59.93
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
9.51e3
  • 9.51e3
59.68
  • 59.68
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
9.91e3
  • 9.91e3
58.00
  • 58.00
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
9.92e3
  • 9.92e3
57.97
  • 57.97
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.06
  • 54.06
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.67
  • 53.67
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.18
  • 53.18
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.07
  • 52.07
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
50.08
  • 50.08
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.00
  • 46.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species14 genesCompare expression
Theria13 species16 genesCompare expression
Mammalia14 species17 genesCompare expression
Amniota16 species19 genesCompare expression
Tetrapoda17 species20 genesCompare expression
Euteleostomi18 species21 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000011830.

Cross-references

EnsemblENSSSCG00000011830
EMBLCU582896
Uniprot/SPTREMBLF1SQY0, F1SQY0_PIG

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