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S. scrofa Gene: APP - ENSSSCG00000012022 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000012022
NameAPP
Descriptionamyloid beta (A4) precursor protein [Source:HGNC Symbol;Acc:HGNC:620]
OrganismSus scrofa (pig)
Synonym(s)ad1, f1shp4, f1shp5
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
63.2
  • 63.2
  • 290
99.74
  • 99.74
  • 98.78
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
70.2
  • 70.2
  • 71.9
  • 79.9
  • 128
99.71
  • 99.71
  • 99.70
  • 99.67
  • 99.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
70.3
  • 70.3
99.71
  • 99.71
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
79.8
  • 79.8
99.67
  • 99.67
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
111
  • 111
  • 667
99.54
  • 99.54
  • 97.18
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
115
  • 115
99.52
  • 99.52
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
176
  • 176
99.26
  • 99.26
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
180
  • 180
  • 207
  • 308
99.24
  • 99.24
  • 99.13
  • 98.70
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
203
  • 203
99.15
  • 99.15
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
203
  • 203
  • 371
  • 393
99.15
  • 99.15
  • 98.43
  • 98.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
205
  • 205
99.14
  • 99.14
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
214
  • 214
  • 311
  • 807
99.10
  • 99.10
  • 98.69
  • 96.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
220
  • 220
  • 284
  • 397
99.07
  • 99.07
  • 98.80
  • 98.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
242
  • 242
  • 445
98.98
  • 98.98
  • 98.12
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
254
  • 254
  • 256
98.93
  • 98.93
  • 98.92
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
260
  • 260
98.90
  • 98.90
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
278
  • 278
98.83
  • 98.83
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
288
  • 288
98.78
  • 98.78
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
294
  • 294
98.76
  • 98.76
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
311
  • 311
  • 329
98.69
  • 98.69
  • 98.61
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
348
  • 348
98.53
  • 98.53
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
372
  • 372
98.43
  • 98.43
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
375
  • 375
98.42
  • 98.42
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
446
  • 446
  • 557
  • 1.24e4
98.11
  • 98.11
  • 97.64
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
451
  • 451
98.09
  • 98.09
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
470
  • 470
98.01
  • 98.01
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
485
  • 485
97.95
  • 97.95
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
514
  • 514
97.82
  • 97.82
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
547
  • 547
97.69
  • 97.69
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
585
  • 585
97.53
  • 97.53
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
730
  • 730
96.91
  • 96.91
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
835
  • 835
96.47
  • 96.47
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
918
  • 918
  • 1.49e3
  • 1.75e3
  • 1.91e3
  • 2.18e3
96.11
  • 96.11
  • 93.70
  • 92.58
  • 91.91
  • 90.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
951
  • 951
95.97
  • 95.97
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.04e3
  • 1.04e3
95.58
  • 95.58
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.05e3
  • 1.05e3
95.53
  • 95.53
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.07e3
  • 1.07e3
95.46
  • 95.46
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.52e3
  • 1.52e3
93.58
  • 93.58
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.58e3
  • 1.58e3
93.32
  • 93.32
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.89e3
  • 1.89e3
92.01
  • 92.01
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.89e3
  • 1.89e3
  • 2.20e3
  • 2.29e3
92.01
  • 92.01
  • 90.69
  • 90.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
2.22e3
  • 2.22e3
90.60
  • 90.60
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
2.55e3
  • 2.55e3
89.19
  • 89.19
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
2.66e3
  • 2.66e3
88.71
  • 88.71
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
2.82e3
  • 2.82e3
88.05
  • 88.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.12e3
  • 3.12e3
  • 5.56e3
86.77
  • 86.77
  • 76.42
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
6.73e3
  • 6.73e3
71.47
  • 71.47
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.36
  • 51.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000012022.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000012022.

Cross-references

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