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S. scrofa Gene: - ENSSSCG00000012634 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000012634
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)25 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0018685nursing stage
9.05e3
  • 9.05e3
61.65
  • 61.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
9.53e3
  • 9.53e3
  • 1.16e4
  • 1.20e4
59.60
  • 59.60
  • 50.97
  • 49.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
9.55e3
  • 9.55e3
59.54
  • 59.54
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
  • 1.35e4
  • 1.38e4
57.19
  • 57.19
  • 42.95
  • 41.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.67
  • 55.67
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.27
  • 52.27
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.14e4
  • 1.14e4
  • 1.19e4
  • 1.24e4
51.73
  • 51.73
  • 49.65
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.59e4
  • 1.74e4
43.50
  • 43.50
  • 32.52
  • 26.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.34e4
  • 1.34e4
  • 1.40e4
43.28
  • 43.28
  • 40.61
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
37.26
  • 37.26
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.67
  • 35.67
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.53e4
  • 1.53e4
35.24
  • 35.24
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
  • 1.59e4
  • 1.63e4
  • 1.71e4
  • 1.78e4
33.76
  • 33.76
  • 32.72
  • 30.83
  • 27.66
  • 24.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.56e4
  • 1.56e4
33.71
  • 33.71
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.58e4
  • 1.58e4
32.99
  • 32.99
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.59e4
  • 1.59e4
32.70
  • 32.70
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.59e4
  • 1.59e4
32.67
  • 32.67
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.61e4
  • 1.61e4
31.72
  • 31.72
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.62e4
  • 1.62e4
  • 1.63e4
  • 1.76e4
31.46
  • 31.46
  • 30.71
  • 25.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.63e4
  • 1.63e4
30.80
  • 30.80
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.71e4
  • 1.71e4
27.66
  • 27.66
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.71e4
  • 1.71e4
  • 1.75e4
27.33
  • 27.33
  • 25.75
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.72e4
  • 1.72e4
  • 1.75e4
  • 1.84e4
  • 1.85e4
26.94
  • 26.94
  • 25.83
  • 22.17
  • 21.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.74e4
  • 1.74e4
26.22
  • 26.22
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.76e4
  • 1.76e4
25.41
  • 25.41
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.77e4
  • 1.77e4
25.14
  • 25.14
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.77e4
  • 1.77e4
24.97
  • 24.97
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.85e4
  • 1.85e4
21.72
  • 21.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000012634.

Paralogs (same species)

Paralogy information comes from OMA : ENSSSCG00000012634.

Cross-references

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