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S. scrofa Gene: SLITRK2 - ENSSSCG00000012724 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000012724
NameSLITRK2
DescriptionSLIT and NTRK like family member 2 [Source:HGNC Symbol;Acc:HGNC:13449]
OrganismSus scrofa (pig)
Synonym(s)cxorf2, kiaa1854, slitl1
Orthologs(s)15 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.07e3
  • 4.07e3
  • 4.14e3
  • 4.15e3
  • 5.18e3
82.73
  • 82.73
  • 82.45
  • 82.43
  • 78.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.38e3
  • 4.38e3
81.43
  • 81.43
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
4.44e3
  • 4.44e3
81.16
  • 81.16
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
5.51e3
  • 5.51e3
76.66
  • 76.66
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.81e3
  • 5.81e3
  • 6.25e3
75.39
  • 75.39
  • 73.53
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.89e3
  • 6.89e3
  • 1.05e4
70.80
  • 70.80
  • 55.50
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
7.24e3
  • 7.24e3
69.32
  • 69.32
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
7.66e3
  • 7.66e3
67.55
  • 67.55
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
8.03e3
  • 8.03e3
65.95
  • 65.95
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
8.24e3
  • 8.24e3
65.09
  • 65.09
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
8.48e3
  • 8.48e3
64.04
  • 64.04
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
8.69e3
  • 8.69e3
63.19
  • 63.19
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
8.71e3
  • 8.71e3
63.10
  • 63.10
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.82e3
  • 8.82e3
62.60
  • 62.60
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
  • 1.26e4
  • 1.29e4
49.50
  • 49.50
  • 46.43
  • 45.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
1.24e4
  • 1.24e4
47.51
  • 47.51
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
  • 1.76e4
44.19
  • 44.19
  • 25.38
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
42.30
  • 42.30
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
  • 1.63e4
36.65
  • 36.65
  • 30.96
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.50e4
  • 1.50e4
36.29
  • 36.29
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
  • 1.56e4
  • 1.59e4
  • 1.61e4
  • 1.78e4
36.00
  • 36.00
  • 33.98
  • 32.65
  • 31.85
  • 24.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.52e4
  • 1.52e4
35.77
  • 35.77
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
  • 1.61e4
  • 1.88e4
35.24
  • 35.24
  • 31.87
  • 20.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.54e4
  • 1.54e4
34.53
  • 34.53
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.61e4
  • 1.61e4
  • 1.87e4
31.96
  • 31.96
  • 20.88
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
30.66
  • 30.66
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.91e4
  • 1.91e4
  • 2.06e4
19.13
  • 19.13
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.91e4
  • 1.91e4
18.98
  • 18.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000012724.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000012724.

Cross-references

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