We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

S. scrofa Gene: VBP1 - ENSSSCG00000012811 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000012811
NameVBP1
Descriptionvon Hippel-Lindau binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12662]
OrganismSus scrofa (pig)
Synonym(s)pfd3, pfdn3
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.48e3
  • 1.48e3
93.75
  • 93.75
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.51e3
  • 1.51e3
93.60
  • 93.60
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.51e3
  • 1.51e3
93.59
  • 93.59
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.53e3
  • 1.53e3
93.53
  • 93.53
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.56e3
  • 1.56e3
  • 1.86e3
  • 2.97e3
93.38
  • 93.38
  • 92.12
  • 87.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.63e3
  • 1.63e3
93.11
  • 93.11
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.66e3
  • 1.66e3
92.98
  • 92.98
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.71e3
  • 1.71e3
  • 2.20e3
  • 2.38e3
  • 3.14e3
  • 4.38e3
92.76
  • 92.76
  • 90.67
  • 89.91
  • 86.71
  • 81.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.73e3
  • 1.73e3
92.67
  • 92.67
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.75e3
  • 1.75e3
92.57
  • 92.57
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.83e3
  • 1.83e3
  • 2.00e3
  • 4.39e3
92.23
  • 92.23
  • 91.53
  • 81.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.86e3
  • 1.86e3
92.11
  • 92.11
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.92e3
  • 1.92e3
91.86
  • 91.86
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.99e3
  • 1.99e3
91.57
  • 91.57
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
2.11e3
  • 2.11e3
91.06
  • 91.06
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
2.12e3
  • 2.12e3
91.03
  • 91.03
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.13e3
  • 2.13e3
  • 2.77e3
90.98
  • 90.98
  • 88.28
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
2.18e3
  • 2.18e3
90.76
  • 90.76
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
2.19e3
  • 2.19e3
90.72
  • 90.72
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
2.22e3
  • 2.22e3
90.58
  • 90.58
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
2.24e3
  • 2.24e3
  • 5.01e3
  • 1.24e4
90.53
  • 90.53
  • 78.75
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
2.25e3
  • 2.25e3
  • 2.36e3
  • 5.68e3
90.45
  • 90.45
  • 90.02
  • 75.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.26e3
  • 2.26e3
  • 2.89e3
  • 4.36e3
90.44
  • 90.44
  • 87.75
  • 81.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
2.28e3
  • 2.28e3
  • 3.65e3
  • 5.18e3
90.35
  • 90.35
  • 84.51
  • 78.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
2.28e3
  • 2.28e3
90.35
  • 90.35
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
2.32e3
  • 2.32e3
90.17
  • 90.17
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.34e3
  • 2.34e3
90.08
  • 90.08
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
2.40e3
  • 2.40e3
89.82
  • 89.82
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
2.42e3
  • 2.42e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
2.54e3
  • 2.54e3
89.26
  • 89.26
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
2.57e3
  • 2.57e3
89.09
  • 89.09
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.65e3
  • 2.65e3
  • 2.87e3
88.78
  • 88.78
  • 87.82
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
2.66e3
  • 2.66e3
88.71
  • 88.71
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
2.69e3
  • 2.69e3
  • 2.80e3
  • 4.03e3
  • 4.22e3
88.61
  • 88.61
  • 88.12
  • 82.93
  • 82.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
2.80e3
  • 2.80e3
88.12
  • 88.12
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
2.89e3
  • 2.89e3
87.75
  • 87.75
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.90e3
  • 2.90e3
  • 6.51e3
87.72
  • 87.72
  • 72.39
AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
2.92e3
  • 2.92e3
87.61
  • 87.61
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
2.99e3
  • 2.99e3
87.33
  • 87.33
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.18e3
  • 3.18e3
86.51
  • 86.51
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
3.24e3
  • 3.24e3
  • 4.87e3
86.28
  • 86.28
  • 79.37
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
3.29e3
  • 3.29e3
86.07
  • 86.07
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
3.42e3
  • 3.42e3
85.50
  • 85.50
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.44e3
  • 3.44e3
85.43
  • 85.43
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
3.62e3
  • 3.62e3
84.67
  • 84.67
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
3.67e3
  • 3.67e3
84.47
  • 84.47
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.21e3
  • 4.21e3
  • 6.68e3
82.14
  • 82.14
  • 71.67
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
4.34e3
  • 4.34e3
81.60
  • 81.60
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
4.77e3
  • 4.77e3
  • 4.85e3
79.80
  • 79.80
  • 79.47
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species14 genesCompare expression
Mammalia13 species15 genesCompare expression
Amniota15 species17 genesCompare expression
Tetrapoda16 species18 genesCompare expression
Euteleostomi17 species19 genesCompare expression
Bilateria24 species26 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000012811.

Cross-references

Do not show this banner again