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S. scrofa Gene: CHID1 - ENSSSCG00000012837 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000012837
NameCHID1
Descriptionchitinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28474]
OrganismSus scrofa (pig)
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
689
  • 689
97.08
  • 97.08
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
979
  • 979
  • 3.72e3
95.85
  • 95.85
  • 84.22
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.04e3
  • 1.04e3
  • 2.98e3
95.60
  • 95.60
  • 87.38
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
1.33e3
  • 1.33e3
  • 1.73e3
  • 8.12e3
94.36
  • 94.36
  • 92.66
  • 65.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.37e3
  • 1.37e3
94.19
  • 94.19
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.38e3
  • 1.38e3
  • 1.46e3
94.14
  • 94.14
  • 93.84
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.39e3
  • 1.39e3
94.10
  • 94.10
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.55e3
  • 1.55e3
  • 3.40e3
  • 1.24e4
93.45
  • 93.45
  • 85.59
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.56e3
  • 1.56e3
93.39
  • 93.39
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.76e3
  • 1.76e3
  • 3.48e3
  • 3.99e3
  • 4.68e3
  • 8.23e3
92.53
  • 92.53
  • 85.24
  • 83.09
  • 80.15
  • 65.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.78e3
  • 1.78e3
  • 2.30e3
  • 5.32e3
92.45
  • 92.45
  • 90.25
  • 77.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.79e3
  • 1.79e3
  • 3.82e3
92.43
  • 92.43
  • 83.82
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.88e3
  • 1.88e3
  • 2.67e3
  • 5.35e3
92.03
  • 92.03
  • 88.70
  • 77.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.05e3
  • 2.05e3
  • 9.48e3
91.30
  • 91.30
  • 59.83
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.26e3
  • 2.26e3
90.42
  • 90.42
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
2.28e3
  • 2.28e3
90.35
  • 90.35
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
2.41e3
  • 2.41e3
89.79
  • 89.79
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
2.44e3
  • 2.44e3
  • 3.32e3
  • 5.21e3
89.68
  • 89.68
  • 85.91
  • 77.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
2.69e3
  • 2.69e3
  • 3.00e3
  • 3.33e3
  • 5.64e3
88.61
  • 88.61
  • 87.30
  • 85.88
  • 76.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
2.75e3
  • 2.75e3
  • 2.76e3
  • 4.01e3
88.35
  • 88.35
  • 88.30
  • 83.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
2.79e3
  • 2.79e3
88.17
  • 88.17
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
2.87e3
  • 2.87e3
87.83
  • 87.83
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.88e3
  • 2.88e3
87.79
  • 87.79
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.94e3
  • 2.94e3
87.56
  • 87.56
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.51e3
  • 3.51e3
  • 9.31e3
85.11
  • 85.11
  • 60.52
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
3.54e3
  • 3.54e3
84.99
  • 84.99
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.59e3
  • 3.59e3
84.77
  • 84.77
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.87e3
  • 3.87e3
83.60
  • 83.60
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
4.67e3
  • 4.67e3
80.20
  • 80.20
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
4.75e3
  • 4.75e3
79.86
  • 79.86
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
4.78e3
  • 4.78e3
79.74
  • 79.74
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
4.91e3
  • 4.91e3
79.21
  • 79.21
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
5.10e3
  • 5.10e3
78.38
  • 78.38
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
6.05e3
  • 6.05e3
74.36
  • 74.36
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
6.17e3
  • 6.17e3
73.86
  • 73.86
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
6.37e3
  • 6.37e3
72.98
  • 72.98
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
6.50e3
  • 6.50e3
72.45
  • 72.45
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
6.64e3
  • 6.64e3
71.85
  • 71.85
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
7.40e3
  • 7.40e3
68.64
  • 68.64
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
7.59e3
  • 7.59e3
67.82
  • 67.82
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
8.11e3
  • 8.11e3
65.60
  • 65.60
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
8.19e3
  • 8.19e3
65.28
  • 65.28
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
8.45e3
  • 8.45e3
64.17
  • 64.17
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
9.03e3
  • 9.03e3
61.73
  • 61.73
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
9.17e3
  • 9.17e3
61.14
  • 61.14
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
9.34e3
  • 9.34e3
60.43
  • 60.43
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
9.55e3
  • 9.55e3
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.04e4
  • 1.04e4
55.75
  • 55.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000012837.

Cross-references

EnsemblENSSSCG00000012837 (CHID1)
EMBLCU928976
Uniprot/SPTREMBLF1RZ01, F1RZ01_PIG

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