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S. scrofa Gene: QTRT1 - ENSSSCG00000013637 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000013637
NameQTRT1
Descriptionqueuine tRNA-ribosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23797]
OrganismSus scrofa (pig)
Synonym(s)tgt
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.92e3
  • 4.92e3
79.15
  • 79.15
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.93e3
  • 5.93e3
74.89
  • 74.89
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
6.31e3
  • 6.31e3
73.28
  • 73.28
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
6.65e3
  • 6.65e3
  • 9.75e3
  • 1.09e4
  • 1.16e4
  • 1.20e4
71.82
  • 71.82
  • 58.65
  • 53.59
  • 50.70
  • 49.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
6.97e3
  • 6.97e3
70.46
  • 70.46
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
7.61e3
  • 7.61e3
  • 1.24e4
67.74
  • 67.74
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
8.19e3
  • 8.19e3
  • 8.66e3
65.27
  • 65.27
  • 63.29
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
8.23e3
  • 8.23e3
  • 9.94e3
65.14
  • 65.14
  • 57.88
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.43e3
  • 8.43e3
  • 1.02e4
  • 1.59e4
64.29
  • 64.29
  • 56.75
  • 32.69
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
8.68e3
  • 8.68e3
63.20
  • 63.20
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.83e3
  • 8.83e3
  • 1.15e4
  • 1.20e4
62.59
  • 62.59
  • 51.33
  • 49.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
9.22e3
  • 9.22e3
60.93
  • 60.93
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
9.27e3
  • 9.27e3
60.73
  • 60.73
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
9.61e3
  • 9.61e3
59.28
  • 59.28
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
9.69e3
  • 9.69e3
58.92
  • 58.92
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.04e4
  • 1.04e4
  • 1.05e4
  • 1.08e4
  • 1.16e4
55.83
  • 55.83
  • 55.36
  • 54.02
  • 50.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.11
  • 54.11
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
  • 1.12e4
  • 1.13e4
53.55
  • 53.55
  • 52.58
  • 52.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
53.34
  • 53.34
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
52.82
  • 52.82
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.32
  • 50.32
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
49.17
  • 49.17
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
49.05
  • 49.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
48.62
  • 48.62
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
  • 1.28e4
48.45
  • 48.45
  • 45.82
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
47.96
  • 47.96
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.86
  • 46.86
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.22
  • 46.22
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.28e4
  • 1.28e4
45.87
  • 45.87
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.20
  • 45.20
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.91
  • 44.91
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.48
  • 44.48
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
43.95
  • 43.95
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.78
  • 43.78
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.61
  • 43.61
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.35e4
  • 1.35e4
42.94
  • 42.94
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
41.71
  • 41.71
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
  • 1.41e4
41.47
  • 41.47
  • 40.41
AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.28
  • 41.28
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.12
  • 41.12
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.49
  • 40.49
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.48
  • 40.48
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.42e4
  • 1.42e4
39.90
  • 39.90
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000013637.

Cross-references

EnsemblENSSSCG00000013637 (QTRT1)
HGNCHGNC:23797 (QTRT1)
EMBLCU993813
Uniprot/SPTREMBLF1S586, F1S586_PIG

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