S. scrofa Gene: COMP - ENSSSCG00000013916 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000013916
NameCOMP
Descriptioncartilage oligomeric matrix protein [Source:HGNC Symbol;Acc:HGNC:2227]
OrganismSus scrofa (pig)
Synonym(s)edm1, epd1, med, psach, thbs5
Orthologs(s)14 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.09e3
  • 1.09e3
  • 1.40e3
95.40
  • 95.40
  • 94.05
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
7.96e3
  • 7.96e3
66.27
  • 66.27
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
8.27e3
  • 8.27e3
64.96
  • 64.96
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
8.52e3
  • 8.52e3
  • 1.24e4
  • 1.61e4
63.90
  • 63.90
  • 47.51
  • 31.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
9.85e3
  • 9.85e3
58.27
  • 58.27
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.02e4
  • 1.02e4
56.84
  • 56.84
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
  • 1.44e4
  • 1.53e4
  • 1.60e4
  • 1.65e4
48.46
  • 48.46
  • 38.82
  • 35.07
  • 32.26
  • 30.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.43
  • 45.43
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
44.64
  • 44.64
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
  • 1.61e4
43.19
  • 43.19
  • 31.64
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
  • 1.41e4
  • 1.46e4
42.34
  • 42.34
  • 40.28
  • 38.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
  • 1.51e4
  • 1.71e4
  • 1.75e4
41.78
  • 41.78
  • 35.84
  • 27.52
  • 25.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.41e4
  • 1.41e4
40.22
  • 40.22
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
34.68
  • 34.68
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.55e4
  • 1.55e4
34.41
  • 34.41
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
  • 1.69e4
33.79
  • 33.79
  • 28.49
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.58e4
  • 1.58e4
32.97
  • 32.97
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
30.40
  • 30.40
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.78e4
  • 1.78e4
  • 1.80e4
24.52
  • 24.52
  • 23.51
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.81e4
  • 1.81e4
23.33
  • 23.33
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.89e4
  • 1.89e4
19.85
  • 19.85
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000013916.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000013916.

Cross-references

EnsemblENSSSCG00000013916 (COMP)
HGNCHGNC:2227 (COMP)
EMBLCU914263
Uniprot/SPTREMBLF1S902, F1S902_PIG

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