S. scrofa Gene: - ENSSSCG00000013990 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000013990
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)27 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
664
  • 664
97.19
  • 97.19
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
687
  • 687
97.09
  • 97.09
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
738
  • 738
  • 4.79e3
96.88
  • 96.88
  • 79.70
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
854
  • 854
  • 871
  • 900
  • 1.79e3
96.39
  • 96.39
  • 96.31
  • 96.19
  • 92.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
946
  • 946
  • 2.39e3
  • 3.23e3
95.99
  • 95.99
  • 89.86
  • 86.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.11e3
  • 1.11e3
95.30
  • 95.30
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.23e3
  • 1.23e3
94.81
  • 94.81
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.25e3
  • 1.25e3
94.70
  • 94.70
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.34e3
  • 1.34e3
  • 6.22e3
94.33
  • 94.33
  • 73.65
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.39e3
  • 1.39e3
94.09
  • 94.09
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.48e3
  • 1.48e3
  • 2.46e3
93.73
  • 93.73
  • 89.58
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.51e3
  • 1.51e3
93.62
  • 93.62
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.53e3
  • 1.53e3
93.54
  • 93.54
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.59e3
  • 1.59e3
93.27
  • 93.27
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
1.74e3
  • 1.74e3
  • 1.86e3
  • 7.69e3
92.64
  • 92.64
  • 92.12
  • 67.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.75e3
  • 1.75e3
92.60
  • 92.60
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.78e3
  • 1.78e3
  • 2.50e3
  • 7.31e3
92.46
  • 92.46
  • 89.40
  • 69.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.82e3
  • 1.82e3
  • 4.38e3
  • 1.24e4
92.28
  • 92.28
  • 81.45
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.87e3
  • 1.87e3
  • 2.52e3
  • 3.17e3
92.09
  • 92.09
  • 89.34
  • 86.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
2.00e3
  • 2.00e3
  • 2.01e3
91.51
  • 91.51
  • 91.50
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
2.10e3
  • 2.10e3
  • 3.82e3
  • 4.82e3
  • 6.26e3
  • 6.52e3
91.12
  • 91.12
  • 83.82
  • 79.56
  • 73.47
  • 72.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
2.35e3
  • 2.35e3
90.05
  • 90.05
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.00e3
  • 3.00e3
  • 3.55e3
  • 3.78e3
87.29
  • 87.29
  • 84.94
  • 84.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
4.49e3
  • 4.49e3
80.99
  • 80.99
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
4.62e3
  • 4.62e3
80.42
  • 80.42
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
4.84e3
  • 4.84e3
79.49
  • 79.49
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
5.44e3
  • 5.44e3
76.95
  • 76.95
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.50e3
  • 5.50e3
  • 5.87e3
76.69
  • 76.69
  • 75.14
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
5.50e3
  • 5.50e3
76.68
  • 76.68
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
5.59e3
  • 5.59e3
76.31
  • 76.31
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
5.69e3
  • 5.69e3
75.90
  • 75.90
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
5.73e3
  • 5.73e3
75.72
  • 75.72
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
5.91e3
  • 5.91e3
  • 7.79e3
74.95
  • 74.95
  • 66.97
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
6.10e3
  • 6.10e3
74.17
  • 74.17
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
6.52e3
  • 6.52e3
72.36
  • 72.36
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
7.32e3
  • 7.32e3
68.97
  • 68.97
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
7.36e3
  • 7.36e3
68.81
  • 68.81
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
7.51e3
  • 7.51e3
68.17
  • 68.17
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
7.87e3
  • 7.87e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
8.05e3
  • 8.05e3
65.88
  • 65.88
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
8.55e3
  • 8.55e3
63.77
  • 63.77
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
8.67e3
  • 8.67e3
63.26
  • 63.26
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
8.93e3
  • 8.93e3
62.17
  • 62.17
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
9.54e3
  • 9.54e3
59.57
  • 59.57
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.30
  • 56.30
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.04e4
  • 1.04e4
55.80
  • 55.80
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.39
  • 55.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species14 genesCompare expression
Mammalia14 species15 genesCompare expression
Amniota16 species17 genesCompare expression
Tetrapoda17 species18 genesCompare expression
Euteleostomi18 species20 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000013990.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Laurasiatheria1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000013990.

Cross-references

EnsemblENSSSCG00000013990
EMBLFP085478
Uniprot/SPTREMBLF1S5R9, F1S5R9_PIG

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