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S. scrofa Gene: TRIM17 - ENSSSCG00000014000 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000014000
NameTRIM17
Descriptiontripartite motif containing 17 [Source:HGNC Symbol;Acc:HGNC:13430]
OrganismSus scrofa (pig)
Synonym(s)rbcc, rnf16, terf
Orthologs(s)11 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
924
  • 924
  • 3.65e3
96.09
  • 96.09
  • 84.53
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.68e4
47.51
  • 47.51
  • 28.65
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.38e4
  • 1.38e4
  • 1.71e4
41.72
  • 41.72
  • 27.37
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.45e4
  • 1.45e4
38.35
  • 38.35
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.48e4
  • 1.48e4
  • 1.54e4
37.25
  • 37.25
  • 34.93
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
37.22
  • 37.22
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.49e4
  • 1.49e4
37.00
  • 37.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
36.74
  • 36.74
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.50e4
  • 1.50e4
  • 1.82e4
  • 2.06e4
36.40
  • 36.40
  • 22.97
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
35.66
  • 35.66
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
  • 1.90e4
33.60
  • 33.60
  • 19.46
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
  • 1.66e4
  • 1.76e4
33.51
  • 33.51
  • 29.63
  • 25.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.57e4
  • 1.57e4
33.49
  • 33.49
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.61e4
  • 1.61e4
31.67
  • 31.67
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.62e4
  • 1.62e4
  • 1.82e4
31.22
  • 31.22
  • 22.89
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
  • 1.68e4
  • 1.68e4
  • 1.78e4
30.43
  • 30.43
  • 28.88
  • 28.82
  • 24.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.67e4
  • 1.67e4
29.09
  • 29.09
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.72e4
  • 1.72e4
27.26
  • 27.26
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.73e4
  • 1.73e4
26.52
  • 26.52
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.75e4
  • 1.75e4
  • 1.89e4
26.03
  • 26.03
  • 19.85
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.77e4
  • 1.77e4
24.77
  • 24.77
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.83e4
  • 1.83e4
22.63
  • 22.63
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.83e4
  • 1.83e4
22.54
  • 22.54
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.85e4
  • 1.85e4
21.60
  • 21.60
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.86e4
  • 1.86e4
21.24
  • 21.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSSSCG00000014000 (TRIM17)
HGNCHGNC:13430 (TRIM17)
Uniprot/SPTREMBLF1S5R1, F1S5R1_PIG

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