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S. scrofa Gene: PRDM6 - ENSSSCG00000014238 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000014238
NamePRDM6
DescriptionPR domain containing 6 [Source:HGNC Symbol;Acc:HGNC:9350]
OrganismSus scrofa (pig)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.33e3
  • 3.33e3
85.90
  • 85.90
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
  • 1.18e4
  • 1.29e4
53.86
  • 53.86
  • 49.85
  • 45.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
1.24e4
  • 1.24e4
47.51
  • 47.51
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.30e4
  • 1.30e4
  • 1.55e4
45.11
  • 45.11
  • 34.40
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
  • 1.80e4
38.76
  • 38.76
  • 23.51
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.49e4
  • 1.49e4
  • 1.62e4
36.96
  • 36.96
  • 31.41
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.49e4
  • 1.49e4
36.79
  • 36.79
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.50e4
  • 1.50e4
36.21
  • 36.21
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
36.15
  • 36.15
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.69e4
  • 1.69e4
  • 1.71e4
  • 1.92e4
  • 1.94e4
28.32
  • 28.32
  • 27.62
  • 18.68
  • 17.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.69e4
  • 1.69e4
28.17
  • 28.17
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.70e4
  • 1.70e4
  • 1.80e4
  • 1.86e4
28.00
  • 28.00
  • 23.78
  • 21.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.72e4
  • 1.72e4
  • 1.88e4
27.02
  • 27.02
  • 20.41
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.73e4
  • 1.73e4
26.55
  • 26.55
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.76e4
  • 1.76e4
25.40
  • 25.40
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.82e4
  • 1.82e4
23.06
  • 23.06
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.86e4
  • 1.86e4
  • 2.06e4
21.36
  • 21.36
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.87e4
  • 1.87e4
20.94
  • 20.94
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
2.03e4
  • 2.03e4
13.75
  • 13.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000014238.

Cross-references

EnsemblENSSSCG00000014238 (PRDM6)
HGNCHGNC:9350 (PRDM6)
EMBLCU468346, CU855648
Uniprot/SPTREMBLF1RKP0, F1RKP0_PIG

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