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S. scrofa Gene: - ENSSSCG00000014969 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000014969
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
937
  • 937
  • 977
96.03
  • 96.03
  • 95.86
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.66e3
  • 1.66e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.79e3
  • 1.79e3
92.42
  • 92.42
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.42e3
  • 2.42e3
  • 7.06e3
89.77
  • 89.77
  • 70.07
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
2.59e3
  • 2.59e3
89.04
  • 89.04
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.85e3
  • 2.85e3
  • 7.36e3
87.93
  • 87.93
  • 68.83
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.91e3
  • 2.91e3
  • 6.70e3
  • 7.00e3
87.68
  • 87.68
  • 71.60
  • 70.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
2.92e3
  • 2.92e3
  • 4.94e3
  • 5.52e3
87.61
  • 87.61
  • 79.08
  • 76.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
2.94e3
  • 2.94e3
87.53
  • 87.53
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
3.30e3
  • 3.30e3
86.03
  • 86.03
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
3.36e3
  • 3.36e3
  • 6.35e3
  • 6.66e3
85.77
  • 85.77
  • 73.10
  • 71.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
3.37e3
  • 3.37e3
  • 6.94e3
  • 1.24e4
85.72
  • 85.72
  • 70.58
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
3.41e3
  • 3.41e3
  • 4.59e3
85.54
  • 85.54
  • 80.57
AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
3.42e3
  • 3.42e3
85.49
  • 85.49
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
3.47e3
  • 3.47e3
85.30
  • 85.30
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
3.56e3
  • 3.56e3
84.93
  • 84.93
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
3.75e3
  • 3.75e3
84.12
  • 84.12
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.80e3
  • 3.80e3
  • 8.70e3
83.90
  • 83.90
  • 63.14
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
3.88e3
  • 3.88e3
  • 6.44e3
  • 6.48e3
  • 7.51e3
  • 7.65e3
83.58
  • 83.58
  • 72.70
  • 72.55
  • 68.17
  • 67.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.97e3
  • 3.97e3
83.19
  • 83.19
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
4.04e3
  • 4.04e3
82.86
  • 82.86
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
4.10e3
  • 4.10e3
82.63
  • 82.63
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
4.10e3
  • 4.10e3
82.61
  • 82.61
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
4.30e3
  • 4.30e3
81.76
  • 81.76
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
4.42e3
  • 4.42e3
81.29
  • 81.29
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.58e3
  • 4.58e3
  • 5.42e3
  • 6.82e3
80.60
  • 80.60
  • 77.01
  • 71.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
4.61e3
  • 4.61e3
80.45
  • 80.45
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
4.65e3
  • 4.65e3
80.31
  • 80.31
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
4.76e3
  • 4.76e3
79.82
  • 79.82
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
4.80e3
  • 4.80e3
79.65
  • 79.65
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
4.80e3
  • 4.80e3
79.64
  • 79.64
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
5.06e3
  • 5.06e3
78.56
  • 78.56
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.15e3
  • 5.15e3
  • 7.10e3
  • 8.20e3
78.17
  • 78.17
  • 69.93
  • 65.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
5.29e3
  • 5.29e3
77.56
  • 77.56
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
5.31e3
  • 5.31e3
77.51
  • 77.51
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
5.84e3
  • 5.84e3
75.24
  • 75.24
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
5.94e3
  • 5.94e3
74.83
  • 74.83
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
5.97e3
  • 5.97e3
74.70
  • 74.70
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
6.11e3
  • 6.11e3
  • 7.69e3
74.10
  • 74.10
  • 67.41
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
6.17e3
  • 6.17e3
73.85
  • 73.85
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.24e3
  • 7.24e3
  • 7.95e3
  • 8.65e3
  • 1.21e4
69.29
  • 69.29
  • 66.29
  • 63.32
  • 48.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.25e3
  • 7.25e3
69.29
  • 69.29
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
7.53e3
  • 7.53e3
68.09
  • 68.09
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
7.65e3
  • 7.65e3
67.58
  • 67.58
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
7.95e3
  • 7.95e3
66.32
  • 66.32
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.12e3
  • 8.12e3
65.58
  • 65.58
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
53.60
  • 53.60
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000014969.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Theria1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000014969.

Cross-references

EnsemblENSSSCG00000014969
EMBLCU640454
Uniprot/SPTREMBLF1STI6, F1STI6_PIG

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