S. scrofa Gene: TMCC2 - ENSSSCG00000015287 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000015287
NameTMCC2
Descriptiontransmembrane and coiled-coil domain family 2 [Source:HGNC Symbol;Acc:HGNC:24239]
OrganismSus scrofa (pig)
Synonym(s)flj38497, hucep11
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • UBERON:0000104life cycle
2.38e3
  • 2.38e3
89.91
  • 89.91
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.78e3
  • 2.78e3
88.22
  • 88.22
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.90e3
  • 2.90e3
  • 9.71e3
87.71
  • 87.71
  • 58.86
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
3.15e3
  • 3.15e3
86.64
  • 86.64
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.76e3
  • 3.76e3
  • 1.25e4
84.06
  • 84.06
  • 47.14
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
4.10e3
  • 4.10e3
  • 4.65e3
  • 5.05e3
  • 6.97e3
82.63
  • 82.63
  • 80.29
  • 78.58
  • 70.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.68e3
  • 4.68e3
80.15
  • 80.15
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
5.84e3
  • 5.84e3
75.26
  • 75.26
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
6.20e3
  • 6.20e3
73.71
  • 73.71
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
6.96e3
  • 6.96e3
70.51
  • 70.51
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
8.80e3
  • 8.80e3
62.70
  • 62.70
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.86e3
  • 8.86e3
  • 1.18e4
  • 1.32e4
62.43
  • 62.43
  • 50.09
  • 43.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
9.39e3
  • 9.39e3
  • 1.24e4
60.21
  • 60.21
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
9.68e3
  • 9.68e3
58.99
  • 58.99
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
9.69e3
  • 9.69e3
58.92
  • 58.92
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
9.79e3
  • 9.79e3
58.50
  • 58.50
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
9.85e3
  • 9.85e3
58.23
  • 58.23
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
57.53
  • 57.53
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.01e4
  • 1.01e4
57.05
  • 57.05
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.08e4
  • 1.08e4
  • 1.17e4
  • 1.19e4
  • 1.28e4
  • 1.33e4
54.34
  • 54.34
  • 50.22
  • 49.50
  • 45.81
  • 43.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.87
  • 51.87
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.40
  • 51.40
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
50.17
  • 50.17
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.58
  • 49.58
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
41.95
  • 41.95
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.37e4
  • 1.37e4
  • 1.40e4
41.79
  • 41.79
  • 40.69
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.44e4
  • 1.44e4
38.90
  • 38.90
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.48e4
  • 1.48e4
37.39
  • 37.39
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
  • 1.53e4
  • 1.56e4
35.29
  • 35.29
  • 35.28
  • 33.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
  • 1.69e4
34.85
  • 34.85
  • 28.18
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
  • 1.59e4
  • 1.62e4
34.40
  • 34.40
  • 32.73
  • 31.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.58e4
  • 1.58e4
  • 1.62e4
32.93
  • 32.93
  • 31.50
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
32.68
  • 32.68
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.62e4
  • 1.62e4
31.42
  • 31.42
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
30.26
  • 30.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000015287.

Cross-references

EnsemblENSSSCG00000015287 (TMCC2)
HGNCHGNC:24239 (TMCC2)
EMBLFP103014, FP565774
Uniprot/SPTREMBLF1S360, F1S360_PIG

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