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S. scrofa Gene: SP4 - ENSSSCG00000015378 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000015378
NameSP4
DescriptionSp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
OrganismSus scrofa (pig)
Synonym(s)hf1b, mgc130008, mgc130009, spr-1
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
4.19e3
  • 4.19e3
82.23
  • 82.23
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
4.64e3
  • 4.64e3
  • 9.65e3
80.32
  • 80.32
  • 59.09
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
5.49e3
  • 5.49e3
76.73
  • 76.73
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
6.15e3
  • 6.15e3
73.94
  • 73.94
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.36e3
  • 6.36e3
73.06
  • 73.06
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.60e3
  • 6.60e3
72.01
  • 72.01
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
6.69e3
  • 6.69e3
71.64
  • 71.64
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
6.96e3
  • 6.96e3
  • 1.17e4
  • 1.28e4
70.51
  • 70.51
  • 50.36
  • 45.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
6.98e3
  • 6.98e3
  • 7.05e3
  • 1.08e4
70.40
  • 70.40
  • 70.13
  • 54.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
7.00e3
  • 7.00e3
70.31
  • 70.31
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
7.15e3
  • 7.15e3
69.71
  • 69.71
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
7.49e3
  • 7.49e3
68.25
  • 68.25
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.59e3
  • 7.59e3
  • 1.28e4
67.84
  • 67.84
  • 45.75
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
7.68e3
  • 7.68e3
67.46
  • 67.46
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
7.75e3
  • 7.75e3
67.14
  • 67.14
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
7.76e3
  • 7.76e3
  • 9.95e3
  • 1.01e4
  • 1.03e4
  • 1.21e4
67.09
  • 67.09
  • 57.82
  • 57.13
  • 56.23
  • 48.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
7.97e3
  • 7.97e3
66.21
  • 66.21
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
7.99e3
  • 7.99e3
66.12
  • 66.12
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
8.05e3
  • 8.05e3
65.86
  • 65.86
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
8.22e3
  • 8.22e3
65.16
  • 65.16
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
8.24e3
  • 8.24e3
65.09
  • 65.09
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
8.68e3
  • 8.68e3
63.22
  • 63.22
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
8.69e3
  • 8.69e3
63.15
  • 63.15
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
9.17e3
  • 9.17e3
61.12
  • 61.12
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
9.27e3
  • 9.27e3
  • 1.10e4
  • 1.35e4
60.72
  • 60.72
  • 53.52
  • 42.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
9.51e3
  • 9.51e3
59.70
  • 59.70
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
9.60e3
  • 9.60e3
  • 1.07e4
59.31
  • 59.31
  • 54.77
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.37
  • 56.37
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.10e4
  • 1.13e4
  • 1.52e4
55.97
  • 55.97
  • 53.44
  • 51.99
  • 35.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
  • 1.50e4
55.67
  • 55.67
  • 36.62
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
  • 1.07e4
  • 1.18e4
54.91
  • 54.91
  • 54.49
  • 49.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
54.56
  • 54.56
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.08e4
  • 1.08e4
54.10
  • 54.10
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
  • 1.24e4
  • 1.47e4
52.98
  • 52.98
  • 47.51
  • 37.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.12e4
  • 1.12e4
52.71
  • 52.71
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.31
  • 52.31
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
51.98
  • 51.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
  • 1.31e4
  • 1.41e4
50.28
  • 50.28
  • 44.43
  • 40.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
48.88
  • 48.88
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.40
  • 48.40
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
46.65
  • 46.65
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
  • 1.36e4
46.56
  • 46.56
  • 42.18
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.34e4
43.68
  • 43.68
  • 43.25
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.35e4
  • 1.35e4
42.75
  • 42.75
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.36e4
  • 1.36e4
42.32
  • 42.32
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
34.27
  • 34.27
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000015378.

Cross-references

EnsemblENSSSCG00000015378 (SP4)
HGNCHGNC:11209 (SP4)
EMBLCU927937
Uniprot/SPTREMBLF1SC08, F1SC08_PIG

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