S. scrofa Gene: OPN1SW - ENSSSCG00000016580 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000016580
NameOPN1SW
Descriptionopsin 1 (cone pigments), short-wave-sensitive [Source:HGNC Symbol;Acc:HGNC:1012]
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
8.14e3
  • 8.14e3
  • 2.06e4
65.52
  • 65.52
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
8.95e3
  • 8.95e3
62.07
  • 62.07
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.02e4
  • 1.02e4
  • 1.77e4
56.76
  • 56.76
  • 24.98
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
36.19
  • 36.19
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.63e4
  • 1.63e4
  • 1.67e4
  • 1.84e4
  • 1.91e4
30.73
  • 30.73
  • 29.35
  • 21.81
  • 19.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
29.79
  • 29.79
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.72e4
  • 1.72e4
  • 1.73e4
27.01
  • 27.01
  • 26.79
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.78e4
  • 1.78e4
24.38
  • 24.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000016580.

Cross-references

EnsemblENSSSCG00000016580 (OPN1SW)
EMBLCU861972
Uniprot/SPTREMBLF1SMN2, F1SMN2_PIG

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