S. scrofa Gene: LMOD2 - ENSSSCG00000016605 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000016605
NameLMOD2
Descriptionleiomodin 2 (cardiac) [Source:HGNC Symbol;Acc:HGNC:6648]
OrganismSus scrofa (pig)
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
134
  • 134
  • 188
  • 210
  • 594
  • 1.18e3
99.44
  • 99.44
  • 99.21
  • 99.11
  • 97.49
  • 95.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
140
  • 140
99.41
  • 99.41
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
169
  • 169
  • 183
  • 253
99.29
  • 99.29
  • 99.23
  • 98.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
222
  • 222
99.06
  • 99.06
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
358
  • 358
98.49
  • 98.49
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
464
  • 464
98.04
  • 98.04
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
524
  • 524
97.78
  • 97.78
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.01e4
  • 1.01e4
  • 1.24e4
57.23
  • 57.23
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.25e4
  • 1.25e4
  • 1.55e4
  • 1.61e4
  • 1.73e4
46.85
  • 46.85
  • 34.25
  • 31.84
  • 26.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.92
  • 45.92
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
43.84
  • 43.84
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
42.18
  • 42.18
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.74e4
  • 2.06e4
41.34
  • 41.34
  • 26.45
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
  • 1.78e4
37.61
  • 37.61
  • 24.62
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
36.12
  • 36.12
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.52e4
  • 1.52e4
  • 1.63e4
35.40
  • 35.40
  • 30.96
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
35.34
  • 35.34
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
34.30
  • 34.30
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
  • 1.86e4
33.59
  • 33.59
  • 21.17
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.62e4
  • 1.62e4
31.36
  • 31.36
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.68e4
  • 1.68e4
28.94
  • 28.94
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.71e4
  • 1.71e4
27.73
  • 27.73
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.75e4
  • 1.75e4
25.77
  • 25.77
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.75e4
  • 1.75e4
25.75
  • 25.75
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.75e4
  • 1.75e4
25.72
  • 25.72
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.76e4
  • 1.76e4
25.61
  • 25.61
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.77e4
  • 1.77e4
25.06
  • 25.06
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.82e4
  • 1.82e4
22.96
  • 22.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species12 genesCompare expression
Theria12 species13 genesCompare expression
Mammalia13 species14 genesCompare expression
Amniota15 species16 genesCompare expression
Tetrapoda16 species17 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000016605.

Cross-references

EnsemblENSSSCG00000016605 (LMOD2)
HGNCHGNC:6648 (LMOD2)
EMBLCU442752
Uniprot/SPTREMBLF1SLY4, F1SLY4_PIG

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