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S. scrofa Gene: CAV1 - ENSSSCG00000016634 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000016634
NameCAV1
DescriptionSus scrofa caveolin 1, caveolae protein, 22kDa (CAV1), mRNA [Source:RefSeq mRNA;Acc:NM_214438]
OrganismSus scrofa (pig)
Synonym(s)q0pha2, q2qle1
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
149
  • 149
  • 212
  • 430
99.37
  • 99.37
  • 99.11
  • 98.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
165
  • 165
  • 464
  • 1.24e4
99.30
  • 99.30
  • 98.04
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
199
  • 199
99.16
  • 99.16
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
258
  • 258
98.91
  • 98.91
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
285
  • 285
  • 343
98.80
  • 98.80
  • 98.55
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
287
  • 287
  • 547
  • 861
98.79
  • 98.79
  • 97.69
  • 96.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
412
  • 412
98.26
  • 98.26
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
494
  • 494
97.91
  • 97.91
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
501
  • 501
97.88
  • 97.88
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
556
  • 556
97.65
  • 97.65
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
559
  • 559
97.63
  • 97.63
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
654
  • 654
97.23
  • 97.23
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
774
  • 774
  • 949
  • 1.92e3
96.72
  • 96.72
  • 95.98
  • 91.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
783
  • 783
96.69
  • 96.69
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
865
  • 865
96.34
  • 96.34
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
879
  • 879
  • 1.08e3
  • 1.19e3
  • 1.24e3
  • 1.35e3
96.28
  • 96.28
  • 95.42
  • 94.96
  • 94.77
  • 94.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
977
  • 977
95.86
  • 95.86
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
2.19e3
  • 2.19e3
90.70
  • 90.70
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
2.24e3
  • 2.24e3
90.52
  • 90.52
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
2.66e3
  • 2.66e3
  • 3.03e3
  • 4.42e3
88.73
  • 88.73
  • 87.17
  • 81.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
2.76e3
  • 2.76e3
88.30
  • 88.30
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
3.39e3
  • 3.39e3
85.64
  • 85.64
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
3.78e3
  • 3.78e3
  • 4.15e3
83.96
  • 83.96
  • 82.42
AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
4.93e3
  • 4.93e3
79.12
  • 79.12
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
5.04e3
  • 5.04e3
78.63
  • 78.63
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
5.38e3
  • 5.38e3
77.21
  • 77.21
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
5.45e3
  • 5.45e3
76.91
  • 76.91
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.92e3
  • 5.92e3
  • 5.96e3
  • 7.44e3
74.90
  • 74.90
  • 74.75
  • 68.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.93e3
  • 5.93e3
  • 9.05e3
74.86
  • 74.86
  • 61.64
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
6.01e3
  • 6.01e3
74.52
  • 74.52
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
7.15e3
  • 7.15e3
69.70
  • 69.70
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
7.16e3
  • 7.16e3
69.65
  • 69.65
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
7.17e3
  • 7.17e3
69.62
  • 69.62
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.58e3
  • 7.58e3
  • 8.21e3
67.88
  • 67.88
  • 65.21
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
7.68e3
  • 7.68e3
67.46
  • 67.46
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.06e3
  • 8.06e3
  • 8.98e3
65.82
  • 65.82
  • 61.92
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
8.07e3
  • 8.07e3
65.81
  • 65.81
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
8.13e3
  • 8.13e3
  • 8.38e3
  • 8.65e3
  • 8.81e3
65.56
  • 65.56
  • 64.47
  • 63.34
  • 62.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
8.32e3
  • 8.32e3
64.73
  • 64.73
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
8.48e3
  • 8.48e3
64.04
  • 64.04
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.55e3
  • 8.55e3
  • 8.68e3
63.77
  • 63.77
  • 63.19
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.67e3
  • 8.67e3
63.26
  • 63.26
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
8.85e3
  • 8.85e3
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
8.89e3
  • 8.89e3
62.33
  • 62.33
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
8.98e3
  • 8.98e3
61.94
  • 61.94
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
9.12e3
  • 9.12e3
61.34
  • 61.34
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.21
  • 57.21
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.41e4
  • 1.41e4
40.40
  • 40.40
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.59e4
  • 1.59e4
32.69
  • 32.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000016634.

Cross-references

EnsemblENSSSCG00000016634 (CAV1)
EMBLAY490204, DP000017, DQ835010
Uniprot/SWISSPROTCAV1_PIG, Q6RVA9

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