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S. scrofa Gene: CDH10 - ENSSSCG00000016802 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000016802
NameCDH10
Descriptioncadherin 10, type 2 (T2-cadherin) [Source:HGNC Symbol;Acc:HGNC:1749]
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.57e3
  • 2.57e3
  • 5.13e3
89.11
  • 89.11
  • 78.24
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
3.47e3
  • 3.47e3
85.28
  • 85.28
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
3.79e3
  • 3.79e3
83.96
  • 83.96
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.05e3
  • 4.05e3
  • 4.12e3
  • 4.40e3
  • 5.13e3
82.83
  • 82.83
  • 82.53
  • 81.37
  • 78.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
4.73e3
  • 4.73e3
79.96
  • 79.96
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
4.99e3
  • 4.99e3
78.84
  • 78.84
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
5.37e3
  • 5.37e3
77.26
  • 77.26
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
5.49e3
  • 5.49e3
76.75
  • 76.75
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.94e3
  • 5.94e3
74.81
  • 74.81
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
6.87e3
  • 6.87e3
70.88
  • 70.88
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
6.87e3
  • 6.87e3
70.87
  • 70.87
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
7.80e3
  • 7.80e3
66.93
  • 66.93
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.84e3
  • 7.84e3
  • 9.73e3
66.76
  • 66.76
  • 58.74
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.31e4
  • 1.31e4
44.44
  • 44.44
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.36e4
  • 1.36e4
42.45
  • 42.45
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
1.53e4
  • 1.53e4
35.01
  • 35.01
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.59e4
  • 1.59e4
  • 1.68e4
32.80
  • 32.80
  • 28.66
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.63e4
  • 1.63e4
30.91
  • 30.91
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
  • 1.92e4
30.64
  • 30.64
  • 18.42
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.94e4
  • 1.94e4
  • 2.06e4
17.74
  • 17.74
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.95e4
  • 1.95e4
17.26
  • 17.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000016802.

Paralogs (same species)

Paralogy information comes from OMA : ENSSSCG00000016802.

Cross-references

EnsemblENSSSCG00000016802 (CDH10)
HGNCHGNC:1749 (CDH10)
EMBLCU915691, FP236489
Uniprot/SPTREMBLF1SRL4, F1SRL4_PIG

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