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S. scrofa Gene: - ENSSSCG00000016837 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000016837
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)22 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
7.31e3
  • 7.31e3
  • 1.02e4
69.02
  • 69.02
  • 56.88
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
7.53e3
  • 7.53e3
68.08
  • 68.08
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
8.50e3
  • 8.50e3
  • 1.67e4
  • 1.90e4
63.98
  • 63.98
  • 29.11
  • 19.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
9.02e3
  • 9.02e3
  • 1.24e4
61.78
  • 61.78
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
9.59e3
  • 9.59e3
59.34
  • 59.34
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
9.91e3
  • 9.91e3
58.00
  • 58.00
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
9.97e3
  • 9.97e3
57.74
  • 57.74
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.98
  • 56.98
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
  • 1.54e4
  • 1.86e4
56.23
  • 56.23
  • 34.93
  • 21.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.22e4
  • 1.54e4
56.11
  • 56.11
  • 48.40
  • 34.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.08e4
  • 1.08e4
54.41
  • 54.41
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.81
  • 53.81
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.65
  • 53.65
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.34
  • 51.34
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.77
  • 50.77
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.50
  • 50.50
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
50.01
  • 50.01
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.46
  • 49.46
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
49.33
  • 49.33
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.64
  • 48.64
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.96
  • 47.96
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.71
  • 47.71
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.53
  • 47.53
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.97
  • 46.97
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.39
  • 46.39
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.28
  • 46.28
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.39
  • 45.39
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.39
  • 44.39
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.40
  • 41.40
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
  • 1.59e4
  • 1.65e4
  • 1.73e4
36.28
  • 36.28
  • 32.54
  • 29.85
  • 26.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
  • 1.75e4
34.77
  • 34.77
  • 25.96
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
  • 1.74e4
  • 1.84e4
34.26
  • 34.26
  • 26.34
  • 21.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.63e4
  • 1.63e4
31.00
  • 31.00
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.65e4
  • 1.65e4
30.26
  • 30.26
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.74e4
  • 1.74e4
26.33
  • 26.33
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.78e4
  • 1.78e4
24.70
  • 24.70
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.78e4
  • 1.78e4
24.44
  • 24.44
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.79e4
  • 1.79e4
24.27
  • 24.27
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.79e4
  • 1.79e4
  • 1.87e4
  • 1.92e4
  • 2.06e4
23.95
  • 23.95
  • 20.69
  • 18.68
  • 12.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.84e4
  • 1.84e4
22.19
  • 22.19
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.88e4
  • 1.88e4
20.34
  • 20.34
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.01e4
  • 2.01e4
  • 2.18e4
14.95
  • 14.95
  • 7.71
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species14 genesCompare expression
Euteleostomi4 species15 genesCompare expression
Bilateria11 species22 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000016837.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Laurasiatheria2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000016837.

Cross-references

EnsemblENSSSCG00000016837
EMBLCU856110
Uniprot/SPTREMBLF1SNB6, F1SNB6_PIG

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