We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

S. scrofa Gene: - ENSSSCG00000016840 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000016840
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)22 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
562
  • 562
97.62
  • 97.62
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
681
  • 681
  • 3.58e3
  • 6.89e3
97.12
  • 97.12
  • 84.82
  • 70.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
850
  • 850
96.40
  • 96.40
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
850
  • 850
96.40
  • 96.40
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
873
  • 873
96.30
  • 96.30
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
924
  • 924
96.09
  • 96.09
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
963
  • 963
  • 1.94e3
  • 3.09e3
95.92
  • 95.92
  • 91.79
  • 86.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
997
  • 997
95.78
  • 95.78
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.18e3
  • 1.18e3
94.99
  • 94.99
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.32e3
  • 1.32e3
94.41
  • 94.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.38e3
  • 1.38e3
  • 3.04e3
  • 8.41e3
94.15
  • 94.15
  • 87.13
  • 64.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.44e3
  • 1.44e3
  • 9.91e3
93.88
  • 93.88
  • 57.99
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.45e3
  • 1.45e3
93.87
  • 93.87
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.72e3
  • 1.72e3
  • 8.82e3
92.71
  • 92.71
  • 62.62
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.75e3
  • 1.75e3
92.58
  • 92.58
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.82e3
  • 1.82e3
92.31
  • 92.31
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
2.03e3
  • 2.03e3
91.38
  • 91.38
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
2.04e3
  • 2.04e3
91.36
  • 91.36
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
2.19e3
  • 2.19e3
90.73
  • 90.73
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
2.28e3
  • 2.28e3
90.32
  • 90.32
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
2.47e3
  • 2.47e3
89.54
  • 89.54
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
2.62e3
  • 2.62e3
88.89
  • 88.89
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.23e3
  • 3.23e3
  • 8.22e3
86.31
  • 86.31
  • 65.16
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
3.57e3
  • 3.57e3
84.87
  • 84.87
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
3.82e3
  • 3.82e3
83.82
  • 83.82
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
3.93e3
  • 3.93e3
83.35
  • 83.35
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.00e3
  • 4.00e3
  • 4.93e3
  • 6.93e3
  • 8.62e3
  • 1.16e4
83.04
  • 83.04
  • 79.11
  • 70.63
  • 63.46
  • 50.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
4.16e3
  • 4.16e3
  • 6.04e3
  • 8.00e3
82.39
  • 82.39
  • 74.41
  • 66.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
4.57e3
  • 4.57e3
80.65
  • 80.65
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
5.39e3
  • 5.39e3
77.15
  • 77.15
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.42e3
  • 5.42e3
  • 8.78e3
77.01
  • 77.01
  • 62.77
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
6.47e3
  • 6.47e3
72.59
  • 72.59
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
6.49e3
  • 6.49e3
72.49
  • 72.49
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
6.58e3
  • 6.58e3
72.11
  • 72.11
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
6.95e3
  • 6.95e3
70.56
  • 70.56
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
7.69e3
  • 7.69e3
  • 8.48e3
  • 1.26e4
  • 1.42e4
67.42
  • 67.42
  • 64.06
  • 46.56
  • 40.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
7.85e3
  • 7.85e3
66.71
  • 66.71
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
8.69e3
  • 8.69e3
63.15
  • 63.15
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
9.27e3
  • 9.27e3
60.70
  • 60.70
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
9.55e3
  • 9.55e3
59.52
  • 59.52
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
9.55e3
  • 9.55e3
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
9.89e3
  • 9.89e3
58.09
  • 58.09
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.04e4
  • 1.04e4
  • 1.24e4
55.94
  • 55.94
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.42
  • 55.42
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.07e4
  • 1.07e4
54.61
  • 54.61
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.52
  • 51.52
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
  • 1.77e4
44.91
  • 44.91
  • 25.00
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.41e4
  • 1.41e4
40.36
  • 40.36
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.43e4
  • 1.43e4
  • 1.65e4
39.35
  • 39.35
  • 30.25
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species14 genesCompare expression
Euteleostomi4 species15 genesCompare expression
Bilateria11 species22 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000016840.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Laurasiatheria2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000016840.

Cross-references

Do not show this banner again