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S. scrofa Gene: DEPDC1B - ENSSSCG00000016932 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000016932
NameDEPDC1B
DescriptionDEP domain containing 1B [Source:HGNC Symbol;Acc:HGNC:24902]
OrganismSus scrofa (pig)
Synonym(s)brcc3, xtp1
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000023oocyte
  • UBERON:0034919juvenile stage
5.37e3
  • 5.37e3
77.24
  • 77.24
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.41e3
  • 8.41e3
  • 1.37e4
  • 1.40e4
64.35
  • 64.35
  • 42.11
  • 40.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.70e3
  • 8.70e3
63.14
  • 63.14
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
8.72e3
  • 8.72e3
63.04
  • 63.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.86e3
  • 8.86e3
  • 1.09e4
62.46
  • 62.46
  • 53.60
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
9.08e3
  • 9.08e3
61.53
  • 61.53
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
9.80e3
  • 9.80e3
58.47
  • 58.47
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
57.62
  • 57.62
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.17
  • 56.17
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.12e4
  • 1.12e4
52.68
  • 52.68
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.02
  • 52.02
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.56e4
47.51
  • 47.51
  • 33.90
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.17
  • 45.17
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.29
  • 44.29
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.36e4
  • 1.36e4
  • 1.62e4
42.49
  • 42.49
  • 31.20
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
  • 1.84e4
  • 2.06e4
39.83
  • 39.83
  • 21.89
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
  • 1.67e4
  • 1.76e4
  • 1.86e4
39.08
  • 39.08
  • 29.25
  • 25.23
  • 21.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
  • 1.50e4
37.60
  • 37.60
  • 36.24
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
37.30
  • 37.30
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
37.08
  • 37.08
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
  • 1.50e4
37.04
  • 37.04
  • 36.44
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
  • 1.75e4
  • 1.82e4
36.43
  • 36.43
  • 25.63
  • 22.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
  • 1.62e4
35.92
  • 35.92
  • 31.30
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.58e4
  • 1.58e4
32.92
  • 32.92
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
30.53
  • 30.53
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.68e4
  • 1.68e4
28.89
  • 28.89
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.68e4
  • 1.68e4
28.85
  • 28.85
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.68e4
  • 1.68e4
28.58
  • 28.58
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.73e4
  • 1.73e4
  • 1.73e4
  • 1.74e4
  • 1.77e4
26.83
  • 26.83
  • 26.51
  • 26.23
  • 24.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.77e4
  • 1.77e4
24.99
  • 24.99
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.78e4
  • 1.78e4
24.64
  • 24.64
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.84e4
  • 1.84e4
22.01
  • 22.01
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.93e4
  • 1.93e4
18.34
  • 18.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species15 genesCompare expression
Mammalia15 species16 genesCompare expression
Amniota17 species18 genesCompare expression
Tetrapoda18 species19 genesCompare expression
Euteleostomi19 species20 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000016932.

Cross-references

EnsemblENSSSCG00000016932 (DEPDC1B)
HGNCHGNC:24902 (DEPDC1B)
EMBLCU570846, CU633287
Uniprot/SPTREMBLF1SKW0, F1SKW0_PIG

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