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S. scrofa Gene: GABRA6 - ENSSSCG00000017027 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000017027
NameGABRA6
Descriptiongamma-aminobutyric acid (GABA) A receptor, alpha 6 [Source:HGNC Symbol;Acc:HGNC:4080]
OrganismSus scrofa (pig)
Orthologs(s)16 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
200
  • 200
  • 412
99.16
  • 99.16
  • 98.26
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
9.39e3
  • 9.39e3
60.19
  • 60.19
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.60e4
  • 1.60e4
  • 1.79e4
  • 1.85e4
  • 1.91e4
32.15
  • 32.15
  • 24.30
  • 21.58
  • 19.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.64e4
  • 1.64e4
30.51
  • 30.51
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.72e4
  • 1.72e4
  • 1.96e4
27.03
  • 27.03
  • 16.71
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.76e4
  • 1.76e4
  • 2.16e4
25.47
  • 25.47
  • 8.32
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.78e4
  • 1.78e4
24.56
  • 24.56
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.85e4
  • 1.85e4
21.78
  • 21.78
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.85e4
  • 1.85e4
  • 1.92e4
21.74
  • 21.74
  • 18.44
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.89e4
  • 1.89e4
  • 2.06e4
19.69
  • 19.69
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.95e4
  • 1.95e4
17.37
  • 17.37
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000017027.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000017027.

Cross-references

EnsemblENSSSCG00000017027 (GABRA6)
HGNCHGNC:4080 (GABRA6)
EMBLFP016136
Uniprot/SPTREMBLF1RR70, F1RR70_PIG

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