S. scrofa Gene: - ENSSSCG00000017344 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000017344
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
9.21e3
  • 9.21e3
  • 1.25e4
60.98
  • 60.98
  • 46.89
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
50.03
  • 50.03
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
44.24
  • 44.24
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
  • 1.48e4
  • 1.55e4
  • 1.56e4
41.32
  • 41.32
  • 37.09
  • 34.40
  • 33.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
40.95
  • 40.95
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
40.13
  • 40.13
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.49e4
  • 1.49e4
37.00
  • 37.00
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.49e4
  • 1.49e4
36.73
  • 36.73
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.53e4
  • 1.53e4
35.18
  • 35.18
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
  • 1.66e4
33.35
  • 33.35
  • 29.68
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.58e4
  • 1.58e4
33.24
  • 33.24
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
31.83
  • 31.83
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.68e4
  • 1.68e4
28.81
  • 28.81
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.72e4
  • 1.72e4
27.01
  • 27.01
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.73e4
  • 1.73e4
26.81
  • 26.81
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.79e4
  • 1.79e4
24.20
  • 24.20
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.91e4
  • 1.91e4
19.14
  • 19.14
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.96e4
  • 1.96e4
  • 2.06e4
16.88
  • 16.88
  • 12.74
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species19 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000017344.

Cross-references

EnsemblENSSSCG00000017344
EMBLCU896578
Uniprot/SPTREMBLF1RR01, F1RR01_PIG

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