S. scrofa Gene: CH242-99N13.1 - ENSSSCG00000017610 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000017610
NameCH242-99N13.1
Description-
OrganismSus scrofa (pig)
Orthologs(s)10 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
  • 1.30e4
  • 1.48e4
49.54
  • 49.54
  • 44.78
  • 37.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
47.80
  • 47.80
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
  • 1.37e4
42.53
  • 42.53
  • 42.14
AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.69
  • 41.69
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.62
  • 41.62
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.46
  • 41.46
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.44e4
  • 1.44e4
39.00
  • 39.00
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.53e4
  • 1.53e4
35.04
  • 35.04
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.54e4
  • 1.54e4
34.64
  • 34.64
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
  • 1.59e4
  • 1.65e4
  • 1.71e4
33.69
  • 33.69
  • 32.78
  • 29.99
  • 27.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
  • 1.65e4
  • 2.06e4
33.54
  • 33.54
  • 29.98
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.60e4
  • 1.60e4
32.29
  • 32.29
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.63e4
  • 1.63e4
30.83
  • 30.83
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
30.74
  • 30.74
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
30.23
  • 30.23
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.69e4
  • 1.69e4
28.19
  • 28.19
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.74e4
  • 1.74e4
  • 1.79e4
  • 1.87e4
26.06
  • 26.06
  • 23.99
  • 20.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.83e4
  • 1.83e4
22.26
  • 22.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.95e4
  • 1.95e4
17.40
  • 17.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria6 species6 genesCompare expression
Mammalia7 species7 genesCompare expression
Amniota9 species9 genesCompare expression
Tetrapoda10 species10 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000017610.

Cross-references

EnsemblENSSSCG00000017610 (CH242-99N13.1)
EMBLCU640430
Uniprot/SPTREMBLF1RSD8, F1RSD8_PIG, K7GRE7, K7GRE7_PIG

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