S. scrofa Gene: CCL4 - ENSSSCG00000017698 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000017698
NameCCL4
DescriptionC-C motif chemokine 4 [Source:UniProtKB/Swiss-Prot;Acc:Q711P4]
OrganismSus scrofa (pig)
Synonym(s)mip-1beta, mip1b, scy4a

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
505
  • 505
  • 4.68e3
  • 6.64e3
97.86
  • 97.86
  • 80.15
  • 71.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
897
  • 897
96.20
  • 96.20
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.30e3
  • 1.30e3
94.49
  • 94.49
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.38e3
  • 1.38e3
  • 3.18e3
  • 5.63e3
94.17
  • 94.17
  • 86.55
  • 76.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.44e3
  • 1.44e3
93.89
  • 93.89
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.69e3
  • 1.69e3
  • 3.19e3
92.85
  • 92.85
  • 86.50
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
2.03e3
  • 2.03e3
91.40
  • 91.40
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
2.38e3
  • 2.38e3
89.90
  • 89.90
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.47e3
  • 2.47e3
89.52
  • 89.52
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.58e3
  • 2.58e3
  • 5.82e3
  • 1.37e4
89.07
  • 89.07
  • 75.34
  • 41.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.77e3
  • 2.77e3
  • 1.06e4
  • 1.16e4
  • 1.47e4
  • 1.67e4
88.27
  • 88.27
  • 55.18
  • 50.68
  • 37.89
  • 29.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
2.91e3
  • 2.91e3
87.69
  • 87.69
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
3.11e3
  • 3.11e3
86.81
  • 86.81
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
3.16e3
  • 3.16e3
86.61
  • 86.61
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
3.46e3
  • 3.46e3
85.34
  • 85.34
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
4.44e3
  • 4.44e3
  • 1.36e4
81.17
  • 81.17
  • 42.55
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
4.56e3
  • 4.56e3
80.69
  • 80.69
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
5.25e3
  • 5.25e3
  • 1.24e4
77.76
  • 77.76
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
5.64e3
  • 5.64e3
76.11
  • 76.11
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
5.85e3
  • 5.85e3
75.22
  • 75.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.52e3
  • 6.52e3
  • 6.72e3
  • 7.22e3
72.37
  • 72.37
  • 71.53
  • 69.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
7.44e3
  • 7.44e3
  • 1.21e4
  • 1.29e4
68.47
  • 68.47
  • 48.50
  • 45.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
8.06e3
  • 8.06e3
65.83
  • 65.83
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
8.20e3
  • 8.20e3
65.23
  • 65.23
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.54e3
  • 8.54e3
  • 1.61e4
63.82
  • 63.82
  • 31.67
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
9.91e3
  • 9.91e3
57.98
  • 57.98
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.04e4
  • 1.04e4
55.94
  • 55.94
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.00
  • 55.00
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.93
  • 53.93
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
53.35
  • 53.35
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.26
  • 53.26
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
  • 1.39e4
  • 1.43e4
  • 1.92e4
52.84
  • 52.84
  • 40.97
  • 39.51
  • 18.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.58
  • 52.58
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
  • 1.88e4
51.17
  • 51.17
  • 20.20
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
50.67
  • 50.67
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.17e4
  • 1.17e4
50.26
  • 50.26
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.86
  • 48.86
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.50
  • 47.50
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.24e4
  • 1.24e4
47.23
  • 47.23
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
  • 1.70e4
46.69
  • 46.69
  • 28.10
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.51
  • 46.51
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.30
  • 46.30
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.73
  • 45.73
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.58e4
  • 1.58e4
33.24
  • 33.24
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.66e4
  • 1.66e4
29.78
  • 29.78
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.75e4
  • 1.75e4
25.76
  • 25.76
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.93e4
  • 1.93e4
18.02
  • 18.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSSSCG00000017698 (CCL4)
EMBLAJ311717, EU364894
Uniprot/SPTREMBLB0FYJ9, B0FYJ9_PIG
Uniprot/SWISSPROTCCL4_PIG, Q711P4

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