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S. scrofa Gene: - ENSSSCG00000017792 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000017792
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)24 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
430
  • 430
98.18
  • 98.18
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
627
  • 627
97.35
  • 97.35
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
738
  • 738
  • 783
  • 1.22e3
  • 1.31e3
  • 3.34e3
96.87
  • 96.87
  • 96.68
  • 94.84
  • 94.47
  • 85.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
836
  • 836
96.46
  • 96.46
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.80e3
  • 1.80e3
  • 1.24e4
92.37
  • 92.37
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.87e3
  • 1.87e3
92.07
  • 92.07
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.94e3
  • 1.94e3
91.79
  • 91.79
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
2.02e3
  • 2.02e3
91.42
  • 91.42
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.34e3
  • 2.34e3
  • 2.93e3
  • 4.22e3
90.09
  • 90.09
  • 87.59
  • 82.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
3.12e3
  • 3.12e3
  • 5.86e3
86.78
  • 86.78
  • 75.18
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
4.00e3
  • 4.00e3
83.04
  • 83.04
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
5.51e3
  • 5.51e3
76.66
  • 76.66
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
6.22e3
  • 6.22e3
  • 1.26e4
73.66
  • 73.66
  • 46.42
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.52e3
  • 7.52e3
  • 1.22e4
  • 1.38e4
68.13
  • 68.13
  • 48.40
  • 41.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
8.43e3
  • 8.43e3
64.25
  • 64.25
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.65e3
  • 8.65e3
63.33
  • 63.33
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
8.97e3
  • 8.97e3
61.98
  • 61.98
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
9.31e3
  • 9.31e3
60.53
  • 60.53
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
9.40e3
  • 9.40e3
  • 1.12e4
60.14
  • 60.14
  • 52.41
AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
9.86e3
  • 9.86e3
58.21
  • 58.21
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.17
  • 57.17
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.05e4
  • 1.17e4
  • 1.26e4
55.75
  • 55.75
  • 55.63
  • 50.30
  • 46.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
  • 1.08e4
  • 1.14e4
55.07
  • 55.07
  • 54.08
  • 51.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.61
  • 53.61
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
  • 1.14e4
53.11
  • 53.11
  • 51.79
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.17e4
  • 1.17e4
50.30
  • 50.30
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.52
  • 49.52
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
  • 1.53e4
48.67
  • 48.67
  • 35.23
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.54
  • 48.54
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.19
  • 48.19
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
  • 1.53e4
48.00
  • 48.00
  • 34.94
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.94
  • 47.94
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.99
  • 46.99
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
  • 1.38e4
  • 1.72e4
44.58
  • 44.58
  • 41.29
  • 27.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.62
  • 43.62
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.37e4
  • 1.37e4
42.08
  • 42.08
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.66
  • 41.66
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.38e4
  • 1.38e4
41.64
  • 41.64
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.42e4
  • 1.42e4
39.87
  • 39.87
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.44e4
  • 1.44e4
38.84
  • 38.84
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
34.17
  • 34.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000017792.

Paralogs (same species)

Paralogy information comes from OMA : ENSSSCG00000017792.

Cross-references

EnsemblENSSSCG00000017792
EMBLCU463908
Uniprot/SPTREMBLF1RN75, F1RN75_PIG

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