S. scrofa Gene: - ENSSSCG00000020662 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000020662
Name-
Description-
OrganismSus scrofa (pig)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
768
  • 768
96.70075
  • 96.70075
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
786
  • 786
96.62203
  • 96.62203
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
966
  • 966
95.84962
  • 95.84962
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
990
  • 990
95.74432
  • 95.74432
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.01e3
  • 1.01e3
95.67060
  • 95.67060
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.09e3
  • 1.09e3
  • 5.72e3
95.30282
  • 95.30282
  • 75.39152
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.11e3
  • 1.11e3
95.24531
  • 95.24531
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
1.11e3
  • 1.11e3
95.22557
  • 95.22557
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.25e3
  • 1.25e3
94.63816
  • 94.63816
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
1.26e3
  • 1.26e3
  • 1.03e4
94.56727
  • 94.56727
  • 55.52456
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.29e3
  • 1.29e3
94.46103
  • 94.46103
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
1.30e3
  • 1.30e3
94.42309
  • 94.42309
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.33e3
  • 1.33e3
94.27525
  • 94.27525
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.50e3
  • 1.50e3
93.55919
  • 93.55919
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.51e3
  • 1.51e3
  • 2.72e3
93.50912
  • 93.50912
  • 88.30140
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.71e3
  • 1.71e3
92.65089
  • 92.65089
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.72e3
  • 1.72e3
92.61554
  • 92.61554
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.72e3
  • 1.72e3
92.59420
  • 92.59420
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
1.73e3
  • 1.73e3
  • 2.26e3
  • 3.02e3
92.55850
  • 92.55850
  • 90.27723
  • 87.03187
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.75e3
  • 1.75e3
92.45690
  • 92.45690
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
1.80e3
  • 1.80e3
92.27460
  • 92.27460
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.81e3
  • 1.81e3
92.21245
  • 92.21245
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.89e3
  • 1.89e3
  • 4.92e3
  • 6.31e3
91.85736
  • 91.85736
  • 78.86227
  • 72.85358
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.91e3
  • 1.91e3
  • 5.52e3
91.78424
  • 91.78424
  • 76.27753
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.92e3
  • 1.92e3
91.74062
  • 91.74062
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
2.01e3
  • 2.01e3
91.36734
  • 91.36734
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
2.07e3
  • 2.07e3
91.08078
  • 91.08078
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
2.13e3
  • 2.13e3
  • 6.58e3
  • 7.84e3
90.83057
  • 90.83057
  • 71.70797
  • 66.28110
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
2.16e3
  • 2.16e3
90.73318
  • 90.73318
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
2.57e3
  • 2.57e3
88.96094
  • 88.96094
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
2.99e3
  • 2.99e3
87.12349
  • 87.12349
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
5.06e3
  • 5.06e3
78.23120
  • 78.23120
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.19e3
  • 7.19e3
69.06689
  • 69.06689
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.83e3
  • 7.83e3
66.30914
  • 66.30914
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
8.62e3
  • 8.62e3
62.91724
  • 62.91724
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
9.40e3
  • 9.40e3
59.58564
  • 59.58564
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.18e4
  • 1.18e4
49.31293
  • 49.31293
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCU914294
EnsemblENSSSCG00000020662
Uniprot/SPTREMBLI3L6M4, I3L6M4_PIG

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